Jatropha Genome Database

JcCB0026731.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0026731.10 + phase: 0 /partial
         (1095 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed seque...  1197   0.0  
gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas emb...   248   1e-65
gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed seque...    76   9e-14

>gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 619

 Score = 1197 bits (604), Expect = 0.0
 Identities = 610/612 (99%)
 Strand = Plus / Plus

                                                                       
Query: 148 aatgctgttggtcataaaagcaaaaaccaagaggcgttgttagaagttattgatgacata 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   aatgctgttggtcataaaagcaaaaaccaagaggcgttgttagaagttattgatgacata 67

                                                                       
Query: 208 gttgtatcaggaggaggtgttagtatagttgatatctttccttccctacaatggcttcct 267
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  gttgtatcaggaggaggtgctagtatagttgatatctttccttccctacaatggcttcct 127

                                                                       
Query: 268 actgccaagagggaaagatcaagaatttggaaattgcaccaaaatacagatgagattctc 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 actgccaagagggaaagatcaagaatttggaaattgcaccaaaatacagatgagattctc 187

                                                                       
Query: 328 gaagatatcttacaagagcatagagctaaaagacaggcgacagcttccaagaattgggat 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gaagatatcttacaagagcatagagctaaaagacaggcgacagcttccaagaattgggat 247

                                                                       
Query: 388 aggagcgaagctgataatcttcttgatgttcttttggatcttcaacagagcggaaatctt 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aggagcgaagctgataatcttcttgatgttcttttggatcttcaacagagcggaaatctt 307

                                                                       
Query: 448 gatgttcctttaactgatgtcgccatcaaagcagcaattattgatatgtttggtgctgga 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gatgttcctttaactgatgtcgccatcaaagcagcaattattgatatgtttggtgctgga 367

                                                                       
Query: 508 agcgacacatcctcaaaaactgcagaatgggcaatggctgagttgatgaggaatccagaa 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agcgacacatcctcaaaaactgcagaatgggcaatggctgagttgatgaggaatccagaa 427

                                                                       
Query: 568 gtaatgaagaaagcacaagaagaattgcggaatttctttggtgaaaatggaaaggttgag 627
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 gtaatgaagaaagcacaagaagaattgcggaatttctttggtgaaaatggaaaggatgag 487

                                                                       
Query: 628 gaagcaaaacttcacgaattaaaatggataaagttaattattaaagaaacattgagatta 687
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gaagcaaaacttcacgaattaaaatggataaagttaattattaaagaaacattgagatta 547

                                                                       
Query: 688 catcctgcagtggctgtaattccaagggtttgtagggaaaagactaaagtttatggatat 747
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 catcctgcagtggctgtaattccaagggtttgtagggaaaagactaaagtttatggatat 607

                       
Query: 748 gacgttgagcct 759
           ||||||||||||
Sbjct: 608 gacgttgagcct 619


>gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001583,
            mRNA sequence
          Length = 258

 Score =  248 bits (125), Expect = 1e-65
 Identities = 134/137 (97%)
 Strand = Plus / Minus

                                                                        
Query: 959  ttgcaaacttgctatatcattttgactggaaatttcctaaaggagtaactgcagaaaatc 1018
            ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 243  ttgcaaactggctatatcatttgtactggaaatttcctaaaggagtaactgcagaaaatc 184

                                                                        
Query: 1019 ttgacatgaatgaagcttttggaggagctgtcaaaagaaaagtagaccttgaattgatcc 1078
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183  ttgacatgaatgaagcttttggaggagctgtcaaaagaaaagtagaccttgaattgatcc 124

                             
Query: 1079 ccattccattccgtccc 1095
            |||||||||||||||||
Sbjct: 123  ccattccattccgtccc 107


>gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 700

 Score = 75.8 bits (38), Expect = 9e-14
 Identities = 86/102 (84%)
 Strand = Plus / Plus

                                                                       
Query: 895 tttggagcaggaaaaagaatatgccctggaatgaccttaggaatggctaatctggagatt 954
           ||||| || ||||| ||||| |||||||||||||| ||||| ||  | ||||| ||  ||
Sbjct: 340 tttggtgcgggaaagagaatttgccctggaatgacattagggataacaaatcttgaactt 399

                                                     
Query: 955 ttccttgcaaacttgctatatcattttgactggaaatttcct 996
           ||||| ||||| ||||||||||||||||| |||||| |||||
Sbjct: 400 ttcctggcaaatttgctatatcattttgattggaaacttcct 441