Jatropha Genome Database

JcCB0025551.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0025551.20 + phase: 2 /partial
         (619 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523677|gb|FM892210.1|FM892210 FM892210 Jatropha curcas emb...   127   2e-29

>gi|268523677|gb|FM892210.1|FM892210 FM892210 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002794,
           mRNA sequence
          Length = 569

 Score =  127 bits (64), Expect = 2e-29
 Identities = 358/456 (78%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccagaagacatttcggcctaagaagaatgctccgtctggaagcaagggtgctcaact 60
           |||||| | |||||| ||||| || |||| ||| || ||||| || |||||||| |||||
Sbjct: 72  aaaccaaaggacattccggcccaaaaagagtgcaccatctgggagtaagggtgcacaact 131

                                                                       
Query: 61  tcaaaaacacatagatgctaccttgggtagtggaaacctaagagaggctgtgcgattacc 120
           |  ||| ||||| ||||| ||||| |||||||||||||| || || |||||  || | ||
Sbjct: 132 tagaaagcacattgatgccaccttaggtagtggaaacctgagggaagctgtaagacttcc 191

                                                                       
Query: 121 tcctggagaagatatcaatgaatggttggctgttaacactgtggactttttcaatcaagt 180
           |||||| || ||| | ||||| ||| | ||||| ||||||||||| || ||||| || ||
Sbjct: 192 tcctggggaggatctgaatgagtggcttgctgtcaacactgtggatttcttcaaccaggt 251

                                                                       
Query: 181 gaacattttatatggaactcttactgaattctgcacagcaacaagctgtccaacaatgac 240
           |||  || | ||||| || || || || ||||| ||  ||   | |||| | |||||| |
Sbjct: 252 gaatcttctctatggtaccctcacagagttctgtactccagagaactgttctacaatgtc 311

                                                                       
Query: 241 tgcaggaccaaaatatgaatatagatgggccgatggaataaccattaaaaagccaatcga 300
           |||||| || || ||||||||||||||||| |||||| |    || || || || || ||
Sbjct: 312 tgcaggccccaagtatgaatatagatgggcagatggagtgcaaatcaagaaacctattga 371

                                                                       
Query: 301 agtgtctgctccaaaatacgttgaatatctgatggactggattgaggctcaactagatga 360
           ||| |||||||||||||| ||||||||| | |||||||||||||| ||||| || |||||
Sbjct: 372 agtttctgctccaaaatatgttgaatatttaatggactggattgaagctcagcttgatga 431

                                                                       
Query: 361 tgaaatgattttccctcaaaaattgggagcaccttttcctacaaatttcagagatgttgt 420
           ||||   || || ||||||||  | || || || |||||    |||||||  || |||||
Sbjct: 432 tgaatccatatttcctcaaaagcttggtgcgccatttcccctcaatttcaaggaggttgt 491

                                               
Query: 421 taagacaatatttaagcggctatttcgagtatatgc 456
           ||||||||||||||| || ||||| || ||||||||
Sbjct: 492 taagacaatatttaaacgtctattccgtgtatatgc 527