Jatropha Genome Database
- JcCB0023821.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0023821.10 - phase: 0 /pseudo/partial
(1128 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268522597|gb|FM896638.1|FM896638 FM896638 Jatropha curcas emb... 1003 0.0
gi|237680509|gb|GO246721.1|GO246721 JcrME_RL0265 Expressed seque... 761 0.0
gi|268519482|gb|FM887949.1|FM887949 FM887949 Jatropha curcas emb... 208 1e-53
gi|268521629|gb|FM896837.1|FM896837 FM896837 Jatropha curcas emb... 56 9e-08
>gi|268522597|gb|FM896638.1|FM896638 FM896638 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003908,
mRNA sequence
Length = 535
Score = 1003 bits (506), Expect = 0.0
Identities = 531/541 (98%), Gaps = 10/541 (1%)
Strand = Plus / Plus
Query: 175 gggattacgagtctcttactgttcaatggggttcttttcagcgatcaagatgattatgaa 234
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 gggattacgagtctcttactgttcaatgggg----------cgatcaagatgattatgaa 54
Query: 235 gttgttcgtaaagttggaagaggaaagtatagtgaggtttttgaaggcataaatgtgaac 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 gttgttcgtaaagttggaagaggaaagtatagtgaggtttttgaaggcataaatgtgaac 114
Query: 295 agtaatgagcgatgcataatcaagatcctcaagccggttaagaaaaagaagatcaagagg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 agtaatgagcgatgcataatcaagatcctcaagccggttaagaaaaagaagatcaagagg 174
Query: 355 gaaataaaaatacttcagaatctctgcggtggcccaaatatagtcaaacttctcgacatt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gaaataaaaatacttcagaatctctgcggtggcccaaatatagtcaaacttctcgacatt 234
Query: 415 gttagagatcagcactcaaaaactcctagcctgatatttgaatttgtgaacagtacagac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gttagagatcagcactcaaaaactcctagcctgatatttgaatttgtgaacagtacagac 294
Query: 475 ttcaaagttttgtacccaacgcttactgattatgacatacgttactacatatacgagctt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttcaaagttttgtacccaacgcttactgattatgacatacgttactacatatacgagctt 354
Query: 535 ctcaaggcattagattactgccattcacaaggcataatgcatagagatgtcaaacctcac 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctcaaggcattagattactgccattcacaaggcataatgcatagagatgtcaaacctcac 414
Query: 595 aatgttatgattgatcatgagttgcgaaaacttcgcttgatagattggggtcttgcagaa 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aatgttatgattgatcatgagttgcgaaaacttcgcttgatagattggggtcttgcagaa 474
Query: 655 ttttaccatcctggcaaggaatataatgttcgggtggcatcaagatactttaagggtcct 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttttaccatcctggcaaggaatataatgttcgggtggcatcaagatactttaagggtcct 534
Query: 715 g 715
|
Sbjct: 535 g 535
>gi|237680509|gb|GO246721.1|GO246721 JcrME_RL0265 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 682
Score = 761 bits (384), Expect = 0.0
Identities = 464/487 (95%), Gaps = 14/487 (2%)
Strand = Plus / Plus
Query: 171 tactgggattacgagtctcttactgttcaatggggttcttttcagcgatcaagatgatta 230
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 135 tactgggattacgagtctcttactgttcaatgggg----------cgatcaagatgatta 184
Query: 231 tgaagttgttcgtaaagttggaagaggaaagtatagtgaggtttttgaaggcataaatgt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgaagttgttcgtaaagttggaagaggaaagtatagtgaggtttttgaaggcataaatgt 244
Query: 291 gaacagtaatgagcgatgcataatcaagatcctcaagccggttaagaaaaagaagatcaa 350
|||||||||||||||||||||||||||||||||||||||||||| ||| | || ||| |
Sbjct: 245 gaacagtaatgagcgatgcataatcaagatcctcaagccggttatgaatatgatgatta- 303
Query: 351 gagggaaataaaaatacttcagaatctctgcggtggcccaaatatagtcaaacttctcga 410
||||||| || | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gagggaactacacacacttcagaatctctgcggtggcccaaatatagtcaaacttctcga 363
Query: 411 cattgttagagatcagcactcaaaaactcctagcctgatatttgaatttgtgaacagtac 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cattgttagagatcagcactcaaaaactcctagcctgatatttgaatttgtgaacagtac 423
Query: 471 agacttcaaagttttgtacccaacgcttactgattatgacatacgttactacatatacga 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agacttcaaagttttgtacccaacgcttactgattatgacatacgttactacatatacga 483
Query: 531 gcttctcaaggcattagattactgccattcacaaggcataatgcatagagatgtcaaacc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gcttctcaaggcattagattactgccattcacaaggcataatgcatagagatgtcaaacc 543
Query: 591 tcacaatgttatgattgatcatgagttgcgaaaacttcgcttgatagattggggtcttgc 650
|||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 544 tcac-atg-tatgattgatcatgagttgcg-aaacttcgcttgatagattggggtcttgc 600
Query: 651 agaattt 657
|||||||
Sbjct: 601 agaattt 607
>gi|268519482|gb|FM887949.1|FM887949 FM887949 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001244,
mRNA sequence
Length = 548
Score = 208 bits (105), Expect = 1e-53
Identities = 255/305 (83%)
Strand = Plus / Minus
Query: 823 gacaaccatgatcagcttgtcaaaattgcaaaggtacttggaactgatgagttgaatgca 882
||||| ||||| ||||| ||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 542 gacaatcatgaccagctggtcaaaattgccaaggttcttggtactgatgatctaaatgca 483
Query: 883 tatctgaataaatatcacttggagcttgatcctcaacttgatgcgcttgttgggaggcac 942
|||||| | || |||||||| ||||| |||| || |||||| || || ||||| || |||
Sbjct: 482 tatctgcacaagtatcacttagagctggatcgtcgacttgaagctctggttggaagacac 423
Query: 943 agcaggaagccctggtccaaattcattaattcagacaatcagcatctagtttctccagag 1002
||||||||||||||||||||||| || ||| |||| ||||||||||| ||||||||||||
Sbjct: 422 agcaggaagccctggtccaaatttatgaatgcagataatcagcatcttgtttctccagag 363
Query: 1003 gctattgattttcttgataagctccttcggtatgatcatcaagacaggctaactgcaaga 1062
|| |||||||||||||||||||| || || ||||||||||| || || || || || |||
Sbjct: 362 gccattgattttcttgataagcttctccgttatgatcatcaggaaagacttacagctaga 303
Query: 1063 gaagcaatggcacatccatatttttctcaggtgagagctgcagaaagtagtagaatgcgg 1122
|| ||| || ||||||||||| ||| || ||| |||||||| ||| |||||||||
Sbjct: 302 gaggcactgattcatccatatttccttcaagtcagaagtgcagaaaatagcagaatgcgg 243
Query: 1123 acaca 1127
|||||
Sbjct: 242 acaca 238
>gi|268521629|gb|FM896837.1|FM896837 FM896837 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004243,
mRNA sequence
Length = 604
Score = 56.0 bits (28), Expect = 9e-08
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 799 aaggaaccattcttttatggtcatgacaaccatgatcagcttgtcaaaattgcaaaggta 858
||||| || ||||| ||||| ||||| || ||||||| || |||||||| || ||||||
Sbjct: 595 aaggagccgttcttctatgggcatgataattatgatcaactggtcaaaatagccaaggta 536
Query: 859 cttggaactgatgagttgaatgcatatctgaa 890
|||||||| ||||| || ||||| ||| ||||
Sbjct: 535 cttggaacagatgaattaaatgcttatttgaa 504