Jatropha Genome Database

JcCB0022671.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0022671.10 + phase: 2 /partial
         (1270 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525022|gb|FM895664.1|FM895664 FM895664 Jatropha curcas emb...   394   e-110

>gi|268525022|gb|FM895664.1|FM895664 FM895664 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002625,
           mRNA sequence
          Length = 477

 Score =  394 bits (199), Expect = e-110
 Identities = 199/199 (100%)
 Strand = Plus / Plus

                                                                       
Query: 50  agggtgttctttaaccagttacactcactgattagtcctgctgattttgaagaaaaccaa 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agggtgttctttaaccagttacactcactgattagtcctgctgattttgaagaaaaccaa 194

                                                                       
Query: 110 gctcaagaaatcaagtttgagagatcaatatccttagacaagttttctaaacttgacatc 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gctcaagaaatcaagtttgagagatcaatatccttagacaagttttctaaacttgacatc 254

                                                                       
Query: 170 aatgagcatcatcaggaggctcagagtacagtagggtactcacctttactgaagaaggaa 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aatgagcatcatcaggaggctcagagtacagtagggtactcacctttactgaagaaggaa 314

                              
Query: 230 acttcaactctgaacaatg 248
           |||||||||||||||||||
Sbjct: 315 acttcaactctgaacaatg 333



 Score =  287 bits (145), Expect = 2e-77
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                       
Query: 353 gaagacaagggtaaagctggtgggactgcctctgctgtttcaagagagatggacagggat 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaagacaagggtaaagctggtgggactgcctctgctgtttcaagagagatggacagggat 392

                                                                       
Query: 413 tttcagaatgtcgaaacaagcggttcagatacaagttctacacgaggaaagaattttgtt 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tttcagaatgtcgaaacaagcggttcagatacaagttctacacgaggaaagaattttgtt 452

                                    
Query: 473 ggtcaaatggggaatggagattttg 497
           |||||||||||||||||||||||||
Sbjct: 453 ggtcaaatggggaatggagattttg 477