Jatropha Genome Database

JcCB0019891.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0019891.20 + phase: 1 /pseudo/partial
         (211 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518152|gb|FM888426.1|FM888426 FM888426 Jatropha curcas emb...   121   3e-28

>gi|268518152|gb|FM888426.1|FM888426 FM888426 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001842,
           mRNA sequence
          Length = 535

 Score =  121 bits (61), Expect = 3e-28
 Identities = 102/115 (88%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                       
Query: 97  cttcaacgaatagtgcagccaccaatgtaggttgaagcatacggttgcccggctagttaa 156
           ||||||||||||||||||||  ||||| |||| |||||||| |||||||||||| |||||
Sbjct: 434 cttcaacgaatagtgcagccttcaatgcaggtcgaagcatatggttgcccggctggttaa 375

                                                                  
Query: 157 acg---ttaatgaaaatagtaattcactattcttaacaataggacctggtgactt 208
           | |   |||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct: 374 atgctgttaatgaaaatagtaattcattattcttaacaatagggcctggagactt 320