Jatropha Genome Database

JcCB0019281.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0019281.10 - phase: 0 
         (2598 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262091218|gb|GT228645.1|GT228645 JC210 Jatropha seeds from fr...   626   e-179
gi|268518158|gb|FM888432.1|FM888432 FM888432 Jatropha curcas emb...    62   3e-09

>gi|262091218|gb|GT228645.1|GT228645 JC210 Jatropha seeds from fruits
            at three stages of maturation Jatropha curcas cDNA clone
            PL03SE.E01.scf 5', mRNA sequence
          Length = 492

 Score =  626 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Minus

                                                                        
Query: 2283 cgtggcacaatgcctcctcgagacaatgcaacagaagggaatgcttcctgattttgttct 2342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492  cgtggcacaatgcctcctcgagacaatgcaacagaagggaatgcttcctgattttgttct 433

                                                                        
Query: 2343 ctgcattggagatgaccggtcagatgaagacatgtttgaggtgataatgagtgccagggc 2402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432  ctgcattggagatgaccggtcagatgaagacatgtttgaggtgataatgagtgccagggc 373

                                                                        
Query: 2403 aggacctactctttcaccagttgctgaggtattcccttgcactgttgggcaaaagccgag 2462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372  aggacctactctttcaccagttgctgaggtattcccttgcactgttgggcaaaagccgag 313

                                                                        
Query: 2463 taaggccaagtactacctggaagacacatctgagattttgagaatgctgcaaggcctggc 2522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312  taaggccaagtactacctggaagacacatctgagattttgagaatgctgcaaggcctggc 253

                                                                        
Query: 2523 aaatgcttcagagcaggctgctagaagtacttcccaatcgtcacactcacacggggtgac 2582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252  aaatgcttcagagcaggctgctagaagtacttcccaatcgtcacactcacacggggtgac 193

                            
Query: 2583 aattggtagagattaa 2598
            ||||||||||||||||
Sbjct: 192  aattggtagagattaa 177


>gi|268518158|gb|FM888432.1|FM888432 FM888432 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001848,
            mRNA sequence
          Length = 538

 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 118/147 (80%)
 Strand = Plus / Plus

                                                                        
Query: 1660 aggaggaggtgctggggtattggatttggtttaggttttcgagtaattgccttggatcca 1719
            |||||||| |||||||||||||| ||||| ||| | ||  ||||  | ||  | ||||||
Sbjct: 26   aggaggagatgctggggtattggttttggattaagcttcagagttgtagcacttgatcca 85

                                                                        
Query: 1720 aatttcagaaaactttcacttgaacatattgtatcagcttataagaggaccaagaatcga 1779
            || ||||| || || ||| | || || ||||| |||||||| ||||||||||  | | | 
Sbjct: 86   aacttcaggaagctctcaatggagcacattgtctcagcttacaagaggaccacaattagg 145

                                       
Query: 1780 gcaattcttttagattatgatggtact 1806
            ||||||||||| |||||||||||||||
Sbjct: 146  gcaattcttttggattatgatggtact 172