Jatropha Genome Database

JcCB0013291.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0013291.20 - phase: 0 /pseudo/partial
         (471 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521510|gb|FM894262.1|FM894262 FM894262 Jatropha curcas emb...   347   7e-96
gi|262090647|gb|GT229005.1|GT229005 JC570 Jatropha seeds from fr...    82   6e-16

>gi|268521510|gb|FM894262.1|FM894262 FM894262 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004570,
           mRNA sequence
          Length = 627

 Score =  347 bits (175), Expect = 7e-96
 Identities = 212/228 (92%), Gaps = 16/228 (7%)
 Strand = Plus / Plus

                                                                       
Query: 199 atgtgggaacttgccactgagaagatcccttgggataatctcaactcaatgcaggtgatt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 416 atgtgggaacttgccactgagaagatcccttgggataatctcaactcaatgcaggt---- 471

                                                                       
Query: 259 ggagctgtaggtttcatgaaccaacgcttagagatccccaaagatgttgatccacagtgg 318
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ------------ttcatgaaccaacgcttagagatccccaaagatgttgatccacagtgg 519

                                                                       
Query: 319 gcttctacaattgagagttgctggcacagcaatcctcagtgccgtccatctttccaagaa 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gcttctacaattgagagttgctggcacagcaatcctcagtgccgtccatctttccaagaa 579

                                                           
Query: 379 ctgctggaaaagcttagggatctgcagagacaatacgcaattcaattc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ctgctggaaaagcttagggatctgcagagacaatacgcaattcaattc 627



 Score =  240 bits (121), Expect = 1e-63
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                       
Query: 78  aggttggtgattttggtctatcgcgtctaaagcatgaaacttacttgacaactaagactg 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aggttggtgattttggtctatcgcgtctaaagcatgaaacttacttgacaactaagactg 326

                                                                       
Query: 138 ggaagggaacgcctcaatggatggcgccagaagttttgcgaaatgaaccctcagatgaaa 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggaagggaacgcctcaatggatggcgccagaagttttgcgaaatgaaccctcagatgaaa 386

            
Query: 198 a 198
           |
Sbjct: 387 a 387


>gi|262090647|gb|GT229005.1|GT229005 JC570 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL13SE.G08.scf 5', mRNA sequence
          Length = 478

 Score = 81.8 bits (41), Expect = 6e-16
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 431 cggcccgttctgcagctggagataacacacaaaaggaatta 471
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 38  cggcccgttctgcagctggagataacacacaaaaggaatta 78