Jatropha Genome Database

JcCB0012961.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0012961.10 - phase: 2 /pseudo/partial
         (1078 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268519238|gb|FM887705.1|FM887705 FM887705 Jatropha curcas emb...   151   2e-36

>gi|268519238|gb|FM887705.1|FM887705 FM887705 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000955,
           mRNA sequence
          Length = 609

 Score =  151 bits (76), Expect = 2e-36
 Identities = 229/276 (82%), Gaps = 3/276 (1%)
 Strand = Plus / Plus

                                                                       
Query: 620 ctggactacaaggggcaacctgcatgcttggctcagtcacatcaacttcacaagcaaatg 679
           ||||||||||| || ||| |||||||  |||| ||||||| ||| |||||| ||||||||
Sbjct: 26  ctggactacaaaggacaagctgcatgtatggcacagtcacctcagcttcacgagcaaatg 85

                                                                       
Query: 680 gcaatctgtggtgataaagaacgtgtctttgaggtcggttctgttttcaaagcagaggaa 739
           || ||||||||| |    || ||| | | |||| | ||| |||| |||| ||||||||| 
Sbjct: 86  gctatctgtggtaactttgagcgtatgtatgagattggtcctgtattcagagcagaggac 145

                                                                       
Query: 740 tcttacacacctaggcatctctgcgagtttgtgggt-catgatgttgaaatggagattaa 798
           |||||||| | |||||||||||| |||| ||| ||| | |||||||||||||||||||||
Sbjct: 146 tcttacactcataggcatctctgtgagtatgttggtacttgatgttgaaatggagattaa 205

                                                                       
Query: 799 aaaacactattctgaggtaatggatgttgttgat-cggttatttat-cacgatttttgac 856
           ||  ||||||| ||||||||||||| |||||||| || |||||| | | | || || |||
Sbjct: 206 aaggcactattttgaggtaatggatattgttgatacgattatttgtactcaatattcgac 265

                                               
Query: 857 tatttgaatgagcattgcaagaatgaacttgaggct 892
           |||||||||||| | |||||||| ||||||||||||
Sbjct: 266 tatttgaatgagaactgcaagaaggaacttgaggct 301