Jatropha Genome Database

JcCB0011561.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0011561.30 + phase: 0 
         (582 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517796|gb|FM893171.1|FM893171 FM893171 Jatropha curcas emb...   406   e-113
gi|268519930|gb|FM889778.1|FM889778 FM889778 Jatropha curcas emb...   222   3e-58

>gi|268517796|gb|FM893171.1|FM893171 FM893171 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003976,
           mRNA sequence
          Length = 215

 Score =  406 bits (205), Expect = e-113
 Identities = 208/209 (99%)
 Strand = Plus / Plus

                                                                       
Query: 112 cctgccggtcgcatcaagatggagctttttgccgatattgcccctaaaactgccgaaaat 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7   cctgccggtcgcatcaagatggagctttttgccgatattgcccctaaaactgccgaaaat 66

                                                                       
Query: 172 ttcaggcaattttgtaccggtgaacacagaaaagcgggagcgcccataggttataagggg 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  ttcaggcaattttgtaccggtgaacacagaaaagcgggagcgcccataggttataagggg 126

                                                                       
Query: 232 tgccagttccataggttgatcaaggatttcatgattcaagctggtgattttcttaagaat 291
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 127 tgccagttccataggttgatcaatgatttcatgattcaagctggtgattttcttaagaat 186

                                        
Query: 292 gatgggagtggatgtgcttctatatatgg 320
           |||||||||||||||||||||||||||||
Sbjct: 187 gatgggagtggatgtgcttctatatatgg 215


>gi|268519930|gb|FM889778.1|FM889778 FM889778 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003513,
           mRNA sequence
          Length = 429

 Score =  222 bits (112), Expect = 3e-58
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                       
Query: 471 gagggttcttggagatggtcttttggttgtccggaagattgagaatgtggctactggacc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33  gagggttcttggagatggtcttttggttgtccggaagattgagaatgtggctactggacc 92

                                                               
Query: 531 caacaaccggcctaaactggcatgtgttattgctgaatgtggggaaatgtaa 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  caacaaccggcctaaactggcatgtgttattgctgaatgtggggaaatgtaa 144