Jatropha Genome Database

JcCB0011381.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0011381.20 - phase: 0 
         (1761 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522567|gb|FM896552.1|FM896552 FM896552 Jatropha curcas emb...    94   6e-19
gi|262090689|gb|GT229047.1|GT229047 JC612 Jatropha seeds from fr...    54   6e-07

>gi|268522567|gb|FM896552.1|FM896552 FM896552 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003789,
           mRNA sequence
          Length = 605

 Score = 93.7 bits (47), Expect = 6e-19
 Identities = 101/119 (84%)
 Strand = Plus / Plus

                                                                       
Query: 791 ttgatgttaatggaagagttcttgatagagaaaaaatgggagaaggcttgttttgggcta 850
           ||||||| ||||||| | ||||||||||| ||  |||||||||||  ||||||||||| |
Sbjct: 414 ttgatgtcaatggaaaaattcttgatagaaaatcaatgggagaagatttgttttgggcaa 473

                                                                      
Query: 851 ttagaggaggaggaggagcaagttttggaattatactttcttggaaaataaaattagtt 909
           |||||||||| || ||||  ||||||||| |||| ||||||||||| || |||| ||||
Sbjct: 474 ttagaggaggtgggggaggtagttttggagttatcctttcttggaagatcaaatcagtt 532


>gi|262090689|gb|GT229047.1|GT229047 JC612 Jatropha seeds from fruits
            at three stages of maturation Jatropha curcas cDNA clone
            PL14SE.C09.scf 5', mRNA sequence
          Length = 626

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 1562 atccaagggctgcctatcttaattatagggatcttgatttggg 1604
            |||||||  |||||||| ||||||| |||||||||||||||||
Sbjct: 293  atccaagaactgcctatgttaattacagggatcttgatttggg 251