Jatropha Genome Database

JcCB0011311.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0011311.20 - phase: 0 /partial
         (930 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524247|gb|FM894926.1|FM894926 FM894926 Jatropha curcas emb...  1084   0.0  

>gi|268524247|gb|FM894926.1|FM894926 FM894926 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000835,
           mRNA sequence
          Length = 593

 Score = 1084 bits (547), Expect = 0.0
 Identities = 550/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 380 tgtttggaggagagtttcagtctggacacacagcagatgtactgagcatctcaatcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   tgtttggaggagagtttcagtctggacacacagcagatgtactgagcatctcaatcaatg 62

                                                                       
Query: 440 ggtcaagctcaagaatgttcgtatctggctcctgtgactcaaccgcccgattgtgggata 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ggtcaagctcaagaatgttcgtatctggctcctgtgactcaaccgcccgattgtgggata 122

                                                                       
Query: 500 ctcgcgttgctagtcgagctgtgcgtacttttcatgggcatgagggagatgttaatgctg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctcgcgttgctagtcgagctgtgcgtacttttcatgggcatgagggagatgttaatgctg 182

                                                                       
Query: 560 tgaagttctttccagatggcaatagatttggaactggatctgacgatggaacttgtagat 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgaagttctttccagatggcaatagatttggaactggatctgacgatggaacttgtagat 242

                                                                       
Query: 620 tgtttgacatcagaactgggcatcaactccaagtatactatcaacagcatggtgacaatg 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgtttgacatcagaactgggcatcaactccaagtatactatcaacagcatggtgacaatg 302

                                                                       
Query: 680 aagtccctcatgtgacctctattgcattctccatatcaggaagacttctctttgctggat 739
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagtccctcatgtgacctctattgcattctccatatcaggaagacttctctttgctggat 362

                                                                       
Query: 740 attcaaatggtgattgctatgtttgggatactttattagcgcaggttgttttaaacttgg 799
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 363 attcaaatggtgattgctatgtttgggatactttattagcgcaggttggtttaaacttgg 422

                                                                       
Query: 800 gatctctgcagaattcgcatgagggtcggataagctgtttgggcttgtcagcagatggga 859
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gatctctgcagaattcgcatgagggtcggataagctgtttgggcttgtcagcagatggga 482

                                                                       
Query: 860 gtgccttgtgtacaggaagttatgatacaaacctaaagatttgggcgttcggaggccata 919
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gtgccttgtgtacaggaagttatgatacaaacctaaagatttgggcgttcggaggccata 542

                      
Query: 920 ggaaggtgatt 930
           |||||||||||
Sbjct: 543 ggaaggtgatt 553