Jatropha Genome Database

JcCB0009541.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0009541.30 + phase: 0 
         (627 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680361|gb|GO246512.1|GO246512 JcrME_RL0056 Expressed seque...   989   0.0  

>gi|237680361|gb|GO246512.1|GO246512 JcrME_RL0056 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 778

 Score =  989 bits (499), Expect = 0.0
 Identities = 543/550 (98%), Gaps = 7/550 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctaccactaacctctccttctattttccctctcttcctaaattgtctcctcgaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 atggctaccactaacctctccttctattttccctctcttcctaaattgtctcctcgaggc 173

                                                                       
Query: 61  aaccaccggttcgagttatccgttttgactcggactagaatgcgtgccgtcagaactcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aaccaccggttcgagttatccgttttgactcggactagaatgcgtgccgtcagaactcgg 233

                                                                       
Query: 121 gctgcggcaggggacttgctgggtgatttcggagccagagacccattccctgcagaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gctgcggcaggggacttgctgggtgatttcggagccagagacccattccctgcagaaata 293

                                                                       
Query: 181 gagagtggttttgcggagaaagtggtaggaaatgttgatactgagcataagattcttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gagagtggttttgcggagaaagtggtaggaaatgttgatactgagcataagattcttatt 353

                                                                       
Query: 241 cccaatatttctgctctctctcttgcccagcaacagtgcacgcctgtctctcctcttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cccaatatttctgctctctctcttgcccagcaacagtgcacgcctgtctctcctcttcaa 413

                                                                       
Query: 301 gcgcccatagataaggatgatgctcaaaagctcttgaagaaggttcttggctggagactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gcgcccatagataaggatgatgctcaaaagctcttgaagaaggttcttggctggagactt 473

                                                                       
Query: 361 ctagaggaagaaaatggacttaaactacagtgcttatggaagttgagagattttaaatgt 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctagaggaag-aaatggacttaaactacagtgcttatggaagttgagagattttaaatgt 532

                                                                       
Query: 421 ggggttgaactaatcaatagaatttacaaggttgcagaagcttctggacatttcccagat 480
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 533 ggggttgaactaatcaatag-atttac-aggttgcagaagcttctggacatttcccagat 590

                                                                       
Query: 481 ctgcatttggtagataccaatcaggttagagctgaactgtggacatcatccattggaggt 540
           |||||||||||||||||  ||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 591 ctgcatttggtagatac--atcaggttagagctg-actgtggacatcat-cattggaggt 646

                     
Query: 541 ctgagtatga 550
           ||||||||||
Sbjct: 647 ctgagtatga 656