Jatropha Genome Database
- JcCB0008071.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0008071.10 + phase: 0
(1143 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|262090943|gb|GT229301.1|GT229301 JC866 Jatropha seeds from fr... 430 e-120
gi|268521420|gb|FM894172.1|FM894172 FM894172 Jatropha curcas emb... 176 4e-44
gi|268521128|gb|FM891847.1|FM891847 FM891847 Jatropha curcas emb... 147 3e-35
gi|268525375|gb|FM896017.1|FM896017 FM896017 Jatropha curcas emb... 127 3e-29
gi|268517366|gb|FM887308.1|FM887308 FM887308 Jatropha curcas emb... 101 2e-21
gi|268522399|gb|FM894544.1|FM894544 FM894544 Jatropha curcas emb... 68 2e-11
gi|262090677|gb|GT229035.1|GT229035 JC600 Jatropha seeds from fr... 64 4e-10
gi|268520694|gb|FM889452.1|FM889452 FM889452 Jatropha curcas emb... 60 6e-09
>gi|262090943|gb|GT229301.1|GT229301 JC866 Jatropha seeds from fruits
at three stages of maturation Jatropha curcas cDNA clone
PL21SE.F09.scf 5', mRNA sequence
Length = 465
Score = 430 bits (217), Expect = e-120
Identities = 217/217 (100%)
Strand = Plus / Minus
Query: 927 tgggaaggaaaagctgagtgagattaaattaagggatcttctgaatggatcagagtatgt 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgggaaggaaaagctgagtgagattaaattaagggatcttctgaatggatcagagtatgt 406
Query: 987 gctaacatacgaggataaggatggcgattggatgcttgttggggatgtgccatgggagat 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gctaacatacgaggataaggatggcgattggatgcttgttggggatgtgccatgggagat 346
Query: 1047 gtttattgatacatgcaagaggctaaagatcatgaagagctctgatgcgattgggttagc 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtttattgatacatgcaagaggctaaagatcatgaagagctctgatgcgattgggttagc 286
Query: 1107 tcctagagcaatggagaaatccaagataaaagcctag 1143
|||||||||||||||||||||||||||||||||||||
Sbjct: 285 tcctagagcaatggagaaatccaagataaaagcctag 249
>gi|268521420|gb|FM894172.1|FM894172 FM894172 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004362,
mRNA sequence
Length = 318
Score = 176 bits (89), Expect = 4e-44
Identities = 193/225 (85%), Gaps = 2/225 (0%)
Strand = Plus / Minus
Query: 877 aagatgttcagttgttttaccataggtcaatgtggatctcatggagctcctgggaag-ga 935
|||||||||||||| ||||| |||||||||| |||||||||||||| | ||||||| ||
Sbjct: 318 aagatgttcagttgctttacaataggtcaatatggatctcatggaggtt-tgggaagaga 260
Query: 936 aaagctgagtgagattaaattaagggatcttctgaatggatcagagtatgtgctaacata 995
| ||||||||||| || | | |||||| || |||| ||||| ||||| || |||||
Sbjct: 259 gatgctgagtgagagcaagctgaaggatctgcttcatggctcagaatatgttcttacata 200
Query: 996 cgaggataaggatggcgattggatgcttgttggggatgtgccatgggagatgtttattga 1055
|||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 199 tgaggataaagatggtgattggatgcttgttggtgatgttccatgggagatgttcattga 140
Query: 1056 tacatgcaagaggctaaagatcatgaagagctctgatgcgattgg 1100
|||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct: 139 tacatgcaagaggctacggattatgaagagctctgatgcaattgg 95
>gi|268521128|gb|FM891847.1|FM891847 FM891847 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002241,
mRNA sequence
Length = 282
Score = 147 bits (74), Expect = 3e-35
Identities = 116/130 (89%)
Strand = Plus / Plus
Query: 971 atggatcagagtatgtgctaacatacgaggataaggatggcgattggatgcttgttgggg 1030
|||| ||||| ||||| || ||||| |||||||| ||||| ||||||||||||||||| |
Sbjct: 27 atggctcagaatatgttcttacatatgaggataaagatggtgattggatgcttgttggtg 86
Query: 1031 atgtgccatgggagatgtttattgatacatgcaagaggctaaagatcatgaagagctctg 1090
|||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||
Sbjct: 87 atgttccatgggagatgttcattgatacatgcaagaggctacggattatgaagagctctg 146
Query: 1091 atgcgattgg 1100
|||| |||||
Sbjct: 147 atgcaattgg 156
>gi|268525375|gb|FM896017.1|FM896017 FM896017 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003146,
mRNA sequence
Length = 569
Score = 127 bits (64), Expect = 3e-29
Identities = 94/104 (90%)
Strand = Plus / Minus
Query: 997 gaggataaggatggcgattggatgcttgttggggatgtgccatgggagatgtttattgat 1056
|||||||| |||| ||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 566 gaggataaagatgttgattggatgcttgttggtgatgttccatgggagatgttcattgat 507
Query: 1057 acatgcaagaggctaaagatcatgaagagctctgatgcgattgg 1100
||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct: 506 acatgcaagaggctacggattatgaagagctctgatgcaattgg 463
>gi|268517366|gb|FM887308.1|FM887308 FM887308 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000478,
mRNA sequence
Length = 438
Score = 101 bits (51), Expect = 2e-21
Identities = 116/134 (86%), Gaps = 4/134 (2%)
Strand = Plus / Minus
Query: 971 atggatcagagtatgtgctaacatacgaggataaggatgg--cgattggatgcttgttgg 1028
|||| ||||| ||||| || ||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 342 atggctcagaatatgttcttacatatgaggataaagatgggtcgattggatgcttgttgg 283
Query: 1029 ggatgtgccatgggagatgtttattgatacatgcaa-gaggctaaagatcatga-agagc 1086
||||| |||||||||||||| |||||||||||||| ||| ||| ||| |||| |||||
Sbjct: 282 tgatgttccatgggagatgttcattgatacatgcaacgagcctacggattatgacagagc 223
Query: 1087 tctgatgcgattgg 1100
|||||||| |||||
Sbjct: 222 tctgatgcaattgg 209
>gi|268522399|gb|FM894544.1|FM894544 FM894544 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000330,
mRNA sequence
Length = 510
Score = 67.9 bits (34), Expect = 2e-11
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 1051 attgatacatgcaagaggctaaagatcatgaagagctctgatgcgattgg 1100
||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct: 509 attgatacatgcaagaggctacggattatgaagagctctgatgcaattgg 460
>gi|262090677|gb|GT229035.1|GT229035 JC600 Jatropha seeds from fruits
at three stages of maturation Jatropha curcas cDNA clone
PL13SE.D12.scf 5', mRNA sequence
Length = 540
Score = 63.9 bits (32), Expect = 4e-10
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 997 gaggataaggatggcgattggatgcttgttggggatgtgccatgggagatgtttattgat 1056
||||| |||||||| || ||||||||| |||| || || || ||||||||||| || ||
Sbjct: 265 gaggacaaggatggagactggatgcttcttggagacgtcccctgggagatgttgatcgag 324
Query: 1057 acatgcaagaggctaaagatcatgaagagctc 1088
|||||||||| |||| ||||||||||||||
Sbjct: 325 tcatgcaagagactaagaatcatgaagagctc 356
>gi|268520694|gb|FM889452.1|FM889452 FM889452 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003121,
mRNA sequence
Length = 505
Score = 60.0 bits (30), Expect = 6e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 1055 atacatgcaagaggctaaagatcatgaagagctctgatgcgattgg 1100
||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct: 505 atacatgcaagaggctacggattatgaagagctctgatgcaattgg 460