Jatropha Genome Database

JcCB0006821.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0006821.10 - phase: 0 /pseudo
         (512 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520112|gb|FM889960.1|FM889960 FM889960 Jatropha curcas emb...   983   0.0  

>gi|268520112|gb|FM889960.1|FM889960 FM889960 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003722,
           mRNA sequence
          Length = 543

 Score =  983 bits (496), Expect = 0.0
 Identities = 510/512 (99%), Gaps = 2/512 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatgcaaaccaccagcccaattcaaagcaatatcggcgtcaccacgattgagcttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atgatgcaaaccaccagcccaattcaaagcaatatcggcgtcaccacgattgagcttgac 475

                                                                       
Query: 61  ggccgccccaatcgaaccaccagcagacgcctgacaaaatccaaaaagcccatcaaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggccgccccaatcgaaccaccagcagacgcctgacaaaatccaaaaagcccatcaaaaac 415

                                                                       
Query: 121 aggacaatcctccccaacattaaacctcttaagatgcctattatgcgcagggtcggacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aggacaatcctccccaacattaaacctcttaagatgcctattatgcgcagggtcggacag 355

                                                                       
Query: 181 agactctggagacacagaagaaaggaacttgacatagtcgtcggaatggaacttccggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agactctggagacacagaagaaaggaacttgacatagtcgtcggaatggaacttccggat 295

                                                                       
Query: 241 atcggtggtaccggcggggaaaggccggttgatctccatccgacgatggagagagtagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atcggtggtaccggcggggaaaggccggttgatctccatccgacgatggagagagtagtg 235

                                                                       
Query: 301 cacgatcaaattgtgtgccatgcgaatccggtgaggcttcattgggtgtccctggccata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cacgatcaaattgtgtgccatgcgaatccggtgaggcttcattgggtgtccctggccata 175

                                                                       
Query: 361 atagtagtcgccgatcgtgggctcgtagaaataggttacgcggcgctttttggcgtcggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atagtagtcgccgatcgtgggctcgtagaaataggttacgcggcgctttttggcgtcggt 115

                                                                       
Query: 421 gcccgtcgatgggagagacacgccaccactatcgcccatttgcaaaaccctatttagtga 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 114 gcccgtcgatgggagagacacgccaccactatcgccca-ttgcaaaaccctatttagtga 56

                                           
Query: 481 aacttggaactaaacactctctgtatgcggtt 512
           ||||||||||| ||||||||||||||||||||
Sbjct: 55  aacttggaact-aacactctctgtatgcggtt 25