Jatropha Genome Database

JcCB0004861.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0004861.20 - phase: 0 
         (1071 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521191|gb|FM891910.1|FM891910 FM891910 Jatropha curcas emb...   761   0.0  

>gi|268521191|gb|FM891910.1|FM891910 FM891910 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002322,
           mRNA sequence
          Length = 458

 Score =  761 bits (384), Expect = 0.0
 Identities = 432/440 (98%), Gaps = 6/440 (1%)
 Strand = Plus / Plus

                                                                       
Query: 339 ttctgtggtaagtgacctcgttctcctttcttgcgttggtctccgtcctgtgcttgtcca 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 20  ttctgtggtaagtgacctcgttctcctttcttgcgttggtctccgtcctgtgcttgt-ca 78

                                                                       
Query: 399 cgggggtgggccagagattaaccactggctcaaacttctcaatattgaacctctcttcca 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  cgggggtgggccagagattaaccactggctcaaacttctcaatattgaacctctcttcca 138

                                                                       
Query: 459 cgagggtcttcgggtcactgacgctaagaccatggagattgtgtctatggtcttagttgg 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 139 cgagggtcttcgggtcactgacgctaagaccatggagattgtgtctatggtctcagttgg 198

                                                                       
Query: 519 taaggttaataaggatttagta-tctctaattaa-taaagcaggggccaccgcg-gttgg 575
           |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct: 199 taaggttaataaggatttagtattctctaattaattaaagcaggggccaccgcgngttgg 258

                                                                       
Query: 576 tctctcc-ggtatggacggccgccttcttatggctcgacccacccctaattccgctcaat 634
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tctctccnggtatggacggccgccttcttatggctcgacccacccctaattccgctcaat 318

                                                                       
Query: 635 tgggctttgtcggagaagtcacccgagttgattccactatcctacagccgcttatcgata 694
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgggctttgtcggagaagtcacccgagttgattccactatcctacagccgcttatcgata 378

                                                                       
Query: 695 acagccacattcccgtgattgcatctgtggcggcggatgagtccggccaatcata-caac 753
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 acagccacattcccgtgattgcatctgtggcggcggatgagtccggccaatcataccaac 438

                               
Query: 754 atcaatgctgatacggtggc 773
           |||||||||||||| |||||
Sbjct: 439 atcaatgctgataccgtggc 458