Jatropha Genome Database

JcCB0004411.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0004411.20 - phase: 0 
         (1788 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523131|gb|FM894714.1|FM894714 FM894714 Jatropha curcas emb...   208   2e-53
gi|268516628|gb|FM887107.1|FM887107 FM887107 Jatropha curcas emb...   113   7e-25
gi|268516907|gb|FM892459.1|FM892459 FM892459 Jatropha curcas emb...   113   7e-25
gi|268516860|gb|FM892412.1|FM892412 FM892412 Jatropha curcas emb...    78   4e-14

>gi|268523131|gb|FM894714.1|FM894714 FM894714 Jatropha curcas embryo
            71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000552,
            mRNA sequence
          Length = 301

 Score =  208 bits (105), Expect = 2e-53
 Identities = 159/169 (94%), Gaps = 6/169 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1061 gcacatcaacaagtaaaaatgaccctcaatttctagcagggaagagatctgtcttccaaa 1120
            |||||||||||||| | | ||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 301  gcacatcaacaagttata-tgaccctcaatgtctagcagggaagagatct-tcttccaaa 244

                                                                        
Query: 1121 ctttgaacaaagagatcttggctttatcattcaatgtcccaaataccacagttgataagc 1180
            ||| |||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 243  ctt-gaactaagagatct-ggctt-atcattcaatgtcccaa-taccacagttgataagc 188

                                                             
Query: 1181 tcttgaatccccaagaggaagaaatcatattggagtgcatttcttgtgc 1229
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187  tcttgaatccccaagaggaagaaatcatattggagtgcatttcttgtgc 139


>gi|268516628|gb|FM887107.1|FM887107 FM887107 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000193,
            mRNA sequence
          Length = 282

 Score =  113 bits (57), Expect = 7e-25
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                     
Query: 1732 taccaaggtgatagtggaccaggaaaaagagccctgagaaaagtttggaagctttga 1788
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34   taccaaggtgatagtggaccaggaaaaagagccctgagaaaagtttggaagctttga 90


>gi|268516907|gb|FM892459.1|FM892459 FM892459 Jatropha curcas embryo
            56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003018,
            mRNA sequence
          Length = 466

 Score =  113 bits (57), Expect = 7e-25
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                     
Query: 1732 taccaaggtgatagtggaccaggaaaaagagccctgagaaaagtttggaagctttga 1788
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278  taccaaggtgatagtggaccaggaaaaagagccctgagaaaagtttggaagctttga 334


>gi|268516860|gb|FM892412.1|FM892412 FM892412 Jatropha curcas embryo
            56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002959,
            mRNA sequence
          Length = 321

 Score = 77.8 bits (39), Expect = 4e-14
 Identities = 52/55 (94%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                   
Query: 1732 taccaaggtgatagtggaccaggaaaaagag-ccctgagaaaagtttggaagctt 1785
            ||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 224  taccaaggtgatagtggaccaggcaaaagtgtccctgagaaaagtttggaagctt 170