Jatropha Genome Database

JcCB0004411.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0004411.10 + phase: 0 
         (1254 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523700|gb|FM892233.1|FM892233 FM892233 Jatropha curcas emb...   357   2e-98

>gi|268523700|gb|FM892233.1|FM892233 FM892233 Jatropha curcas embryo
            56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_002733,
            mRNA sequence
          Length = 508

 Score =  357 bits (180), Expect = 2e-98
 Identities = 347/402 (86%), Gaps = 3/402 (0%)
 Strand = Plus / Minus

                                                                        
Query: 853  agagatggatccacggtgttccaatccccagtacagcagcatggcttcaattttacatac 912
            |||||||||| ||| |||||||||||||||| |||||||||| |||| |||||| |||||
Sbjct: 506  agagatggatgcacagtgttccaatccccagcacagcagcattgctttaattttccatac 447

                                                                        
Query: 913  caactagaaagtgggaatcacggtgatcaaccaagctccagccaggtattcatatttcct 972
            |||||||| ||||| ||| | ||||||| |||||||||  |||||||||||||| |||||
Sbjct: 446  caactagagagtggcaatgagggtgatctaccaagctctggccaggtattcatagttcct 387

                                                                        
Query: 973  gtttctcctggtgatgtaattgttgctggaacggatggattatttgacaacttatataac 1032
             ||||||| ||||| |||||| |||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 386  atttctccgggtgacgtaattattgccggaacagatggattattcgacaacttgtataac 327

                                                                        
Query: 1033 aatgaggttactgctgctgttgttcatgcggcaagagctggcttagggccccaagcaaca 1092
             |   ||||||  ||||||||||| ||||   |||||||||||||||||| |||| ||||
Sbjct: 326  ta---ggttaccactgctgttgttgatgccctaagagctggcttagggcctcaagtaaca 270

                                                                        
Query: 1093 gctcagaagattgcagatttggcacgtcaacgggcactggataggaaccgacagacaccc 1152
            |||||||| ||||||| | || || ||||||| |||||||||  ||||||||||||||| 
Sbjct: 269  gctcagaaaattgcagctatgacaagtcaacgagcactggatgagaaccgacagacacct 210

                                                                        
Query: 1153 ttttctgctgctgctcaagatgctgggttccgctactatggtggtaaacttgatgacata 1212
            |||||| |||||||| ||   ||||||||| |||||||||||||||||||||||||||| 
Sbjct: 209  ttttctactgctgcttaacgcgctgggttcagctactatggtggtaaacttgatgacatc 150

                                                      
Query: 1213 actgttgtagtgtcatacgtaatgagctccaacaatttgtga 1254
            |||||||||||||| || ||||  ||||| ||||||||||||
Sbjct: 149  actgttgtagtgtcgtatgtaacaagctctaacaatttgtga 108