Jatropha Genome Database
- JcCB0004391.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0004391.20 - phase: 0 /partial
(330 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268523298|gb|FM894064.1|FM894064 FM894064 Jatropha curcas emb... 579 e-166
gi|268521952|gb|FM892792.1|FM892792 FM892792 Jatropha curcas emb... 383 e-107
gi|268519933|gb|FM889781.1|FM889781 FM889781 Jatropha curcas emb... 151 6e-37
>gi|268523298|gb|FM894064.1|FM894064 FM894064 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_005037,
mRNA sequence
Length = 613
Score = 579 bits (292), Expect = e-166
Identities = 309/312 (99%), Gaps = 2/312 (0%)
Strand = Plus / Minus
Query: 20 catctggtgctgacaaggacgaagaagattcagaaggaagaactgcgttgcattttg-ct 78
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 613 catctggtgctgacaagaacgaagaagattcagaaggaagaactgcgt-gcattttggct 555
Query: 79 tgtgggtatggagaggtgaagtgtgctcaaatccttgttgaggcgggagcaactgttgat 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgtgggtatggagaggtgaagtgtgctcaaatccttgttgaggcgggagcaactgttgat 495
Query: 139 gcactggataaaaataagaacactgcgcttcattatgcagctggttatgggaggaaagag 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gcactggataaaaataagaacactgcgcttcattatgcagctggttatgggaggaaagag 435
Query: 199 tgtgtggccctactgctagagaatggagctgctgttactcttcagaacctggatggcaag 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgtgtggccctactgctagagaatggagctgctgttactcttcagaacctggatggcaag 375
Query: 259 acacccattgatgttgccaagctaaacaaccagcatgaagtactgaagttgctcgagaag 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 acacccattgatgttgccaagctaaacaaccagcatgaagtactgaagttgctcgagaag 315
Query: 319 gatgccttcctt 330
||||||||||||
Sbjct: 314 gatgccttcctt 303
>gi|268521952|gb|FM892792.1|FM892792 FM892792 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003442,
mRNA sequence
Length = 488
Score = 383 bits (193), Expect = e-107
Identities = 205/209 (98%)
Strand = Plus / Minus
Query: 122 cgggagcaactgttgatgcactggataaaaataagaacactgcgcttcattatgcagctg 181
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 487 cgggatcaactgttgatgcactggattttaataagaacactgcgcttcattatgcagctg 428
Query: 182 gttatgggaggaaagagtgtgtggccctactgctagagaatggagctgctgttactcttc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gttatgggaggaaagagtgtgtggccctactgctagagaatggagctgctgttactcttc 368
Query: 242 agaacctggatggcaagacacccattgatgttgccaagctaaacaaccagcatgaagtac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agaacctggatggcaagacacccattgatgttgccaagctaaacaaccagcatgaagtac 308
Query: 302 tgaagttgctcgagaaggatgccttcctt 330
|||||||||||||||||||||||||||||
Sbjct: 307 tgaagttgctcgagaaggatgccttcctt 279
>gi|268519933|gb|FM889781.1|FM889781 FM889781 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003516,
mRNA sequence
Length = 283
Score = 151 bits (76), Expect = 6e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 229 gctgttactcttcagaacctggatggcaagacacccattgatgttgccaagctaaacaac 288
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gctgtaactcttcagaacctgaatggcaagacacccattgatgttgccaagctaaacaac 240
Query: 289 cagcatgaagtactgaagttgctc 312
||||||||||||||||||||||||
Sbjct: 241 cagcatgaagtactgaagttgctc 264