Jatropha Genome Database

JcCB0003421.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0003421.10 - phase: 2 /partial
         (802 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524682|gb|FM895380.1|FM895380 FM895380 Jatropha curcas emb...   317   1e-86

>gi|268524682|gb|FM895380.1|FM895380 FM895380 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002189,
           mRNA sequence
          Length = 630

 Score =  317 bits (160), Expect = 1e-86
 Identities = 200/208 (96%), Gaps = 4/208 (1%)
 Strand = Plus / Minus

                                                                       
Query: 598 ctcatgcattgagagattactttgctccctcaatgtggtaaacttggtgctaccagcagc 657
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctcatgcattgagagat-acttggctccctcaatgtggtaaacttggtgctaccagcagc 572

                                                                       
Query: 658 tgaggaagctgagtcaatttggacaagg-agatttggcttcagaaagatgag-cgaggga 715
           ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 571 tgaggaagctgagtcaattgggacaaggaagatttggcttcagaaagatgagccgaggga 512

                                                                       
Query: 716 caactgtcaaaatatacaagggaactgcaggtgacgatattcaagggcacaacaatgctg 775
           |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 511 caactgtccaaatatacaagggaactgcaggggacgatattcaagggcacaacaatgctg 452

                                       
Query: 776 g-agaaagaggttccccagataattgac 802
           | ||||||||||||||||||||||||||
Sbjct: 451 gaagaaagaggttccccagataattgac 424