Jatropha Genome Database

JcCB0001101.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0001101.20 + phase: 0 
         (237 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262091081|gb|GT228508.1|GT228508 JC073 Jatropha seeds from fr...   345   1e-95
gi|237681005|gb|GO247641.1|GO247641 JcrME_RL1185 Expressed seque...   339   8e-94
gi|268525572|gb|FM890827.1|FM890827 FM890827 Jatropha curcas emb...   192   1e-49

>gi|262091081|gb|GT228508.1|GT228508 JC073 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone Contig74 5', mRNA sequence
          Length = 568

 Score =  345 bits (174), Expect = 1e-95
 Identities = 174/174 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggaaacaaccagtaagaatgaaggcggtggtttacgctctttcgccatttcagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  atggggaaacaaccagtaagaatgaaggcggtggtttacgctctttcgccatttcagcag 116

                                                                       
Query: 61  aagataatgcctggtttatggaaggatctgcctaacaagatccatcacaaggtgtcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 aagataatgcctggtttatggaaggatctgcctaacaagatccatcacaaggtgtcagag 176

                                                                 
Query: 121 aactggatcagcgccaccctccttctcacccctctcatcggcacctacacgtat 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aactggatcagcgccaccctccttctcacccctctcatcggcacctacacgtat 230


>gi|237681005|gb|GO247641.1|GO247641 JcrME_RL1185 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 583

 Score =  339 bits (171), Expect = 8e-94
 Identities = 171/171 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggaaacaaccagtaagaatgaaggcggtggtttacgctctttcgccatttcagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  atggggaaacaaccagtaagaatgaaggcggtggtttacgctctttcgccatttcagcag 140

                                                                       
Query: 61  aagataatgcctggtttatggaaggatctgcctaacaagatccatcacaaggtgtcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 aagataatgcctggtttatggaaggatctgcctaacaagatccatcacaaggtgtcagag 200

                                                              
Query: 121 aactggatcagcgccaccctccttctcacccctctcatcggcacctacacg 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactggatcagcgccaccctccttctcacccctctcatcggcacctacacg 251


>gi|268525572|gb|FM890827.1|FM890827 FM890827 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000773,
           mRNA sequence
          Length = 606

 Score =  192 bits (97), Expect = 1e-49
 Identities = 97/97 (100%)
 Strand = Plus / Plus

                                                                       
Query: 78  atggaaggatctgcctaacaagatccatcacaaggtgtcagagaactggatcagcgccac 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   atggaaggatctgcctaacaagatccatcacaaggtgtcagagaactggatcagcgccac 64

                                                
Query: 138 cctccttctcacccctctcatcggcacctacacgtat 174
           |||||||||||||||||||||||||||||||||||||
Sbjct: 65  cctccttctcacccctctcatcggcacctacacgtat 101