Jatropha Genome Database

JcCB0000571.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0000571.10 + phase: 2 /TE/partial
         (738 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas emb...   167   2e-41
gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas emb...   121   1e-27

>gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001895,
           mRNA sequence
          Length = 495

 Score =  167 bits (84), Expect = 2e-41
 Identities = 147/168 (87%)
 Strand = Plus / Plus

                                                                       
Query: 12  atggagagaaggaagagatggaaaagatcccatatgcttcagcagtcggaagcttaatgt 71
           |||||||||||||||| | ||||||||| ||||||||||||||||| | |||||| ||| 
Sbjct: 266 atggagagaaggaagaaaaggaaaagattccatatgcttcagcagttgaaagcttgatga 325

                                                                       
Query: 72  atgccttggtttgtacacgaccagatattgctcactcagtcggagtggtgagtcggtttc 131
           ||  | || |||||||||  | ||||||||||||||||||  |||| |||||||||||||
Sbjct: 326 atatcatgatttgtacacagctagatattgctcactcagttagagtagtgagtcggtttc 385

                                                           
Query: 132 tttcaaatcctggaaaggaacattgggctgcagttaaatggattttca 179
           ||||||||||| ||||| |||||||| ||||||| |||||||||||||
Sbjct: 386 tttcaaatcctagaaagaaacattggactgcagtgaaatggattttca 433


>gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587,
           mRNA sequence
          Length = 563

 Score =  121 bits (61), Expect = 1e-27
 Identities = 70/73 (95%)
 Strand = Plus / Minus

                                                                       
Query: 666 attgccgattagctgcagggatgatggagagtatggctaacgtccccacttgagcgtgca 725
           |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 119 attgccgattagctgcagggatgatggaaagtttggctgacgtccccacttgagcgtgca 60

                        
Query: 726 gggggagatttgt 738
           |||||||||||||
Sbjct: 59  gggggagatttgt 47