Jatropha Genome Database

JcCA0317991.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0317991.20 + phase: 0 
         (990 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520369|gb|FM890217.1|FM890217 FM890217 Jatropha curcas emb...   234   2e-61

>gi|268520369|gb|FM890217.1|FM890217 FM890217 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004032,
           mRNA sequence
          Length = 367

 Score =  234 bits (118), Expect = 2e-61
 Identities = 121/122 (99%)
 Strand = Plus / Plus

                                                                       
Query: 865 aggcttgctcttaggaagggaagaggagaggagcgcatctgtaaagtgataagttctcca 924
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aggcttgctcttaggaagggaagaggagaggagcgcatctgtaaagtgataagttctcca 305

                                                                       
Query: 925 tgtttagctgaagctgaagcgcgatttcagatttctgctgaaggggtaactgatgttaag 984
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 306 tgtttagctgaagctgaagcgcgatttcagatttctgctgaaggggtaactgatgtaaag 365

             
Query: 985 ga 986
           ||
Sbjct: 366 ga 367



 Score =  228 bits (115), Expect = 1e-59
 Identities = 121/123 (98%)
 Strand = Plus / Plus

                                                                       
Query: 743 agtttggggtagctgttgtaatcacaaaccaagtagttgcacaagtagatggttctgcta 802
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 34  agtttggggtagctgttgtaatcacaaaccaagtagttgctcatgtagatggttctgcta 93

                                                                       
Query: 803 tttttgcggggcctcaaatcaagcctattggtggtaatattatggctcatgcttccacta 862
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  tttttgcggggcctcaaatcaagcctattggtggtaatattatggctcatgcttccacta 153

              
Query: 863 caa 865
           |||
Sbjct: 154 caa 156