Jatropha Genome Database

JcCA0317291.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0317291.30 + phase: 0 /partial
         (1137 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525961|gb|FM891217.1|FM891217 FM891217 Jatropha curcas emb...   632   0.0  

>gi|268525961|gb|FM891217.1|FM891217 FM891217 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001339,
           mRNA sequence
          Length = 424

 Score =  632 bits (319), Expect = 0.0
 Identities = 340/343 (99%), Gaps = 3/343 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaaccaattctaattccagtgttgggcttgaagttagtaacactcttcagtctatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  atggcaaccaattctaattccagtgttgggcttgaagttagtaacactcttcagtctatc 143

                                                                       
Query: 61  tgctacaaacgcggctcgcttcatctcctcgaccagagaaagcttcctctcgagacggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tgctacaaacgcggctcgcttcatctcctcgaccagagaaagcttcctctcgagacggaa 203

                                                                       
Query: 121 tatctggttatcggagatgcatcagatggatggtctgctataagagagatggtggtccgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tatctggttatcggagatgcatcagatggatggtctgctataagagagatggtggtccgt 263

                                                                       
Query: 181 ggggcacctgctattgctattgcagcagctctctcactcgcagttgaagtttttaacttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggggcacctgctattgctattgcagcagctctctcactcgcagttgaagtttttaacttg 323

                                                                       
Query: 241 caggattttaatggtacatctgatgatgctggctcgttcctcttccagaaattggactat 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 cagga-tttaatggtacatctgatgatgctggctcgttcctcttccagaaa-tggactat 381

                                                      
Query: 301 ctcgtttcaagccggccaactgcagtgaatctttcagatgctg 343
           ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 382 ctcgtttcaagccgg-caactgcagtgaatctttcagatgctg 423