Jatropha Genome Database
- JcCA0317001.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0317001.10 + phase: 0 /partial
(267 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|218687494|gb|GH296148.1|GH296148 JCL597 Jatropha curcas total... 402 e-113
gi|218687578|gb|GH296171.1|GH296171 JCL620 Jatropha curcas total... 402 e-113
gi|218687681|gb|GH295754.1|GH295754 JCL203 Jatropha curcas total... 402 e-113
gi|218687730|gb|GH295777.1|GH295777 JCL226 Jatropha curcas total... 402 e-113
gi|268519832|gb|FM888299.1|FM888299 FM888299 Jatropha curcas emb... 58 5e-09
gi|268521341|gb|FM892060.1|FM892060 FM892060 Jatropha curcas emb... 58 5e-09
gi|268522648|gb|FM896689.1|FM896689 FM896689 Jatropha curcas emb... 58 5e-09
gi|268522970|gb|FM896413.1|FM896413 FM896413 Jatropha curcas emb... 58 5e-09
gi|237680825|gb|GO247037.1|GO247037 JcrME_RL0581 Expressed seque... 50 1e-06
>gi|218687494|gb|GH296148.1|GH296148 JCL597 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 442
Score = 402 bits (203), Expect = e-113
Identities = 244/264 (92%)
Strand = Plus / Plus
Query: 4 gttcaggttttggctccgttgcctattggatttactgtgttcgtagtgcatatggccacc 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gttccggttttggctccgttgcctattggatttactgtgttcgtagtgcatatggccacc 128
Query: 64 ctccccataactggcactgggatcaatcctgctagaagttttggagctgctgtcatttat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ctccccataactggcactgggatcaatcctgctagaagttttggagctgctgtcatttat 188
Query: 124 aacaagaagatggtttgggatgatcattggattttctgggtcggaccacttgttggnnnn 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aacaagaagatggtttgggatgatcattggattttctgggtcggaccacttgttggagca 248
Query: 184 nnnnnnnnnnnnnnntatcatcagattgtattgagagcaggagctgttaaagctttggga 243
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcagcagcagcagcatatcatcagattgtattgagagcaggagctgttaaagctttggga 308
Query: 244 tcattccgcggcaaccctgttatg 267
||||||||||||||||||||||||
Sbjct: 309 tcattccgcggcaaccctgttatg 332
>gi|218687578|gb|GH296171.1|GH296171 JCL620 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 438
Score = 402 bits (203), Expect = e-113
Identities = 244/264 (92%)
Strand = Plus / Plus
Query: 4 gttcaggttttggctccgttgcctattggatttactgtgttcgtagtgcatatggccacc 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gttccggttttggctccgttgcctattggatttactgtgttcgtagtgcatatggccacc 123
Query: 64 ctccccataactggcactgggatcaatcctgctagaagttttggagctgctgtcatttat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ctccccataactggcactgggatcaatcctgctagaagttttggagctgctgtcatttat 183
Query: 124 aacaagaagatggtttgggatgatcattggattttctgggtcggaccacttgttggnnnn 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aacaagaagatggtttgggatgatcattggattttctgggtcggaccacttgttggagca 243
Query: 184 nnnnnnnnnnnnnnntatcatcagattgtattgagagcaggagctgttaaagctttggga 243
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcagcagcagcagcatatcatcagattgtattgagagcaggagctgttaaagctttggga 303
Query: 244 tcattccgcggcaaccctgttatg 267
||||||||||||||||||||||||
Sbjct: 304 tcattccgcggcaaccctgttatg 327
>gi|218687681|gb|GH295754.1|GH295754 JCL203 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 442
Score = 402 bits (203), Expect = e-113
Identities = 244/264 (92%)
Strand = Plus / Plus
Query: 4 gttcaggttttggctccgttgcctattggatttactgtgttcgtagtgcatatggccacc 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gttccggttttggctccgttgcctattggatttactgtgttcgtagtgcatatggccacc 128
Query: 64 ctccccataactggcactgggatcaatcctgctagaagttttggagctgctgtcatttat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ctccccataactggcactgggatcaatcctgctagaagttttggagctgctgtcatttat 188
Query: 124 aacaagaagatggtttgggatgatcattggattttctgggtcggaccacttgttggnnnn 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aacaagaagatggtttgggatgatcattggattttctgggtcggaccacttgttggagca 248
Query: 184 nnnnnnnnnnnnnnntatcatcagattgtattgagagcaggagctgttaaagctttggga 243
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcagcagcagcagcatatcatcagattgtattgagagcaggagctgttaaagctttggga 308
Query: 244 tcattccgcggcaaccctgttatg 267
||||||||||||||||||||||||
Sbjct: 309 tcattccgcggcaaccctgttatg 332
>gi|218687730|gb|GH295777.1|GH295777 JCL226 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 438
Score = 402 bits (203), Expect = e-113
Identities = 244/264 (92%)
Strand = Plus / Plus
Query: 4 gttcaggttttggctccgttgcctattggatttactgtgttcgtagtgcatatggccacc 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gttccggttttggctccgttgcctattggatttactgtgttcgtagtgcatatggccacc 123
Query: 64 ctccccataactggcactgggatcaatcctgctagaagttttggagctgctgtcatttat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ctccccataactggcactgggatcaatcctgctagaagttttggagctgctgtcatttat 183
Query: 124 aacaagaagatggtttgggatgatcattggattttctgggtcggaccacttgttggnnnn 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aacaagaagatggtttgggatgatcattggattttctgggtcggaccacttgttggagca 243
Query: 184 nnnnnnnnnnnnnnntatcatcagattgtattgagagcaggagctgttaaagctttggga 243
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcagcagcagcagcatatcatcagattgtattgagagcaggagctgttaaagctttggga 303
Query: 244 tcattccgcggcaaccctgttatg 267
||||||||||||||||||||||||
Sbjct: 304 tcattccgcggcaaccctgttatg 327
>gi|268519832|gb|FM888299.1|FM888299 FM888299 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001685,
mRNA sequence
Length = 339
Score = 58.0 bits (29), Expect = 5e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 139 tgggatgatcattggattttctgggtcggaccacttgttgg 179
|||||||||||||||||||||||||| ||||| |||||||
Sbjct: 18 tgggatgatcattggattttctgggttggaccgtttgttgg 58
Score = 52.0 bits (26), Expect = 3e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 215 tgagagcaggagctgttaaagctttgggatcattccgcggcaaccc 260
||||||||| |||| | |||||||||||||| |||||| |||||||
Sbjct: 94 tgagagcagcagctatcaaagctttgggatctttccgcagcaaccc 139
>gi|268521341|gb|FM892060.1|FM892060 FM892060 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002524,
mRNA sequence
Length = 549
Score = 58.0 bits (29), Expect = 5e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 139 tgggatgatcattggattttctgggtcggaccacttgttgg 179
|||||||||||||||||||||||||| ||||| |||||||
Sbjct: 267 tgggatgatcattggattttctgggttggaccgtttgttgg 307
Score = 52.0 bits (26), Expect = 3e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 215 tgagagcaggagctgttaaagctttgggatcattccgcggcaaccc 260
||||||||| |||| | |||||||||||||| |||||| |||||||
Sbjct: 343 tgagagcagcagctatcaaagctttgggatctttccgcagcaaccc 388
>gi|268522648|gb|FM896689.1|FM896689 FM896689 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003965,
mRNA sequence
Length = 565
Score = 58.0 bits (29), Expect = 5e-09
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 139 tgggatgatcattggattttctgggtcggaccacttgttgg 179
|||||||||||||||||||||||||| ||||| |||||||
Sbjct: 163 tgggatgatcattggattttctgggttggaccgtttgttgg 123
Score = 52.0 bits (26), Expect = 3e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 215 tgagagcaggagctgttaaagctttgggatcattccgcggcaaccc 260
||||||||| |||| | |||||||||||||| |||||| |||||||
Sbjct: 87 tgagagcagcagctatcaaagctttgggatctttccgcagcaaccc 42
>gi|268522970|gb|FM896413.1|FM896413 FM896413 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003629,
mRNA sequence
Length = 473
Score = 58.0 bits (29), Expect = 5e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 139 tgggatgatcattggattttctgggtcggaccacttgttgg 179
|||||||||||||||||||||||||| ||||| |||||||
Sbjct: 392 tgggatgatcattggattttctgggttggaccgtttgttgg 432
>gi|237680825|gb|GO247037.1|GO247037 JcrME_RL0581 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 674
Score = 50.1 bits (25), Expect = 1e-06
Identities = 127/161 (78%)
Strand = Plus / Minus
Query: 10 gttttggctccgttgcctattggatttactgtgttcgtagtgcatatggccaccctcccc 69
||||||||||| | || ||||||||| |||||||| | || || ||||||| | ||
Sbjct: 464 gttttggctccacttccaattggatttgctgtgttcatggttcacttggccacaattcca 405
Query: 70 ataactggcactgggatcaatcctgctagaagttttggagctgctgtcatttataacaag 129
||||| || |||||||| || || || || ||||| ||||||||||| ||||| || |||
Sbjct: 404 ataacaggaactgggattaacccagcaaggagtttgggagctgctgtgatttacaataag 345
Query: 130 aagatggtttgggatgatcattggattttctgggtcggacc 170
| | || |||||||| || ||||| |||||||| |||||
Sbjct: 344 gacaaggcatgggatgaccaatggatattctgggttggacc 304