Jatropha Genome Database

JcCA0316871.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0316871.30 - phase: 0 
         (369 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523874|gb|FM890560.1|FM890560 FM890560 Jatropha curcas emb...   708   0.0  

>gi|268523874|gb|FM890560.1|FM890560 FM890560 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000446,
           mRNA sequence
          Length = 567

 Score =  708 bits (357), Expect = 0.0
 Identities = 367/369 (99%), Gaps = 1/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgtccaagttgaatcagttgcagtctaaggcatgtcaggcatcgaagtttgttgcc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  atggcgtccaagt-gaatcagttgcagtctaaggcatgtcaggcatcgaagtttgttgcc 69

                                                                       
Query: 61  aagcacggaactgcctactacaagcaattgttagagcagaataagcaatatattcaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aagcacggaactgcctactacaagcaattgttagagcagaataagcaatatattcaggag 129

                                                                       
Query: 121 cctgctactgttgagaagtgcaatttgttgtcaaagcaattgttctacactcgtcttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 cctgctactgttgagaagtgcaatttgttgtcaaagcaattgttctacactcgtcttgct 189

                                                                       
Query: 181 agtattcctaatcgatatgaatcattctggaaggaacttgattatgtgaagaatttatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 agtattcctaatcgatatgaatcattctggaaggaacttgattatgtgaagaatttatgg 249

                                                                       
Query: 241 aagaacaggcaggagctgaaggttgaagatgctggtattgctgctttgtttggtttggag 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 250 aagaacaggcaggagctgaaggttgaagatgctggtattgctgcttagtttggtttggag 309

                                                                       
Query: 301 tgttttacttggttttgtgctggtgagattgtgggaagaggatttactatcactggctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgttttacttggttttgtgctggtgagattgtgggaagaggatttactatcactggctac 369

                    
Query: 361 tatccttga 369
           |||||||||
Sbjct: 370 tatccttga 378