Jatropha Genome Database

JcCA0316521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0316521.10 + phase: 0 /pseudo/partial
         (621 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525721|gb|FM890976.1|FM890976 FM890976 Jatropha curcas emb...   351   6e-97

>gi|268525721|gb|FM890976.1|FM890976 FM890976 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000950,
           mRNA sequence
          Length = 554

 Score =  351 bits (177), Expect = 6e-97
 Identities = 349/405 (86%), Gaps = 1/405 (0%)
 Strand = Plus / Plus

                                                                       
Query: 209 ggggccaaccttgctcaatctcttattgtcgttgcctctcaatctaatgtcattttttcc 268
           |||||||||||||||||||||| | ||| ||| |||||||||||| ||||| |||| || 
Sbjct: 5   ggggccaaccttgctcaatctcctcttgccgtcgcctctcaatctgatgtcgttttctct 64

                                                                       
Query: 269 accgtcggctttcctttccacatccgtcaagtcctactggattccaccattggagctctc 328
           | |||||||||||| | | || ||||||||||||| ||||||||||||| ||||||||||
Sbjct: 65  atcgtcggctttccctccgacgtccgtcaagtcctcctggattccaccactggagctctc 124

                                                                       
Query: 329 caaagtcttcgcattggtggaattcttgttg-catgaccacattcgatcccttcctcgcc 387
           ||| | || |||   |||||||| || |||| ||||||||||| |||||||| |||||||
Sbjct: 125 caaggcctccgcccgggtggaatcctcgttgacatgaccacatccgatccctccctcgcc 184

                                                                       
Query: 388 tcagagatttctgatgtggcatttgccaaaaattaccactccattgatgctccagtttct 447
           || ||||| || |  | |||||  |||||||||| |||||| |||||||||||||| || 
Sbjct: 185 tccgagatctccgcagcggcatccgccaaaaattgccactctattgatgctccagtctcc 244

                                                                       
Query: 448 agaggtgaccgtggtgataagaacaaaacccatgcaatatttgcaggaggggataaagta 507
            |||||||||| |||| ||||||   ||||| ||||||||| || ||||||||||| | |
Sbjct: 245 ggaggtgaccgcggtgctaagaatggaacccttgcaatattcgctggaggggataaggca 304

                                                                       
Query: 508 gtcattgatcgcttgaatcccctgtttgttctcatgggaaaggttaattacatgggtgct 567
           || || |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 305 gttatcgatcgcttgaatcccctgtttgctctcatgggaaaggttaattacatgggtgct 364

                                                        
Query: 568 cctggcaaaggccaattggcgaagctaacaaatcaaattgccata 612
           ||||||||||||||||| ||||||||  ||||||||||| |||||
Sbjct: 365 cctggcaaaggccaatttgcgaagctggcaaatcaaattaccata 409