Jatropha Genome Database

JcCA0316031.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0316031.10 - phase: 0 
         (498 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268519357|gb|FM887824.1|FM887824 FM887824 Jatropha curcas emb...   299   2e-81
gi|237680809|gb|GO247021.1|GO247021 JcrME_RL0565 Expressed seque...    72   7e-13

>gi|268519357|gb|FM887824.1|FM887824 FM887824 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001096,
           mRNA sequence
          Length = 320

 Score =  299 bits (151), Expect = 2e-81
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                       
Query: 348 tgtttgcaagcgaagctgtaaggcctatactgttgatggtgttgaggttaaagaagatga 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgtttgcaagcgaagctgtaaggcctatactgttgatggtgttgaggttaaagaagatga 60

                                                                       
Query: 408 aattaggggtagcctagaaaagactatgcaagtcttttttggatcattcaagctttatga 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aattaggggtagcctagaaaagactatgcaagtcttttttggatcattcaagctttatga 120

                                          
Query: 468 agcctatgccttggcaaatcctgatgcctaa 498
           |||||||||||||||||||||||||||||||
Sbjct: 121 agcctatgccttggcaaatcctgatgcctaa 151


>gi|237680809|gb|GO247021.1|GO247021 JcrME_RL0565 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 674

 Score = 71.9 bits (36), Expect = 7e-13
 Identities = 123/152 (80%)
 Strand = Plus / Plus

                                                                       
Query: 125 ttgtcaatcttcaaggagatggaggacctggcactctcagacaaatcaccttccctgaag 184
           ||||| ||||| ||||| ||||||| ||||| ||||||||||||||||  ||     |||
Sbjct: 199 ttgtccatcttgaaggaaatggaggtcctggtactctcagacaaatcaattttagcaaag 258

                                                                       
Query: 185 ggagtccaattagtcatttgaaggagacagttgatgcaattgatgaggagaatttcatat 244
           | || ||| | | | || |||||||||| |||||||| || ||| | || ||||||||||
Sbjct: 259 gtagcccattgacttatgtgaaggagactgttgatgcgatagataaagaaaatttcatat 318

                                           
Query: 245 ttgaatattcaataatcggaggcgatcctgct 276
           ||||||||||| || | | |||||||||||||
Sbjct: 319 ttgaatattcagtagttgaaggcgatcctgct 350