Jatropha Genome Database

JcCA0315371.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0315371.20 - phase: 0 /partial
         (525 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525632|gb|FM890887.1|FM890887 FM890887 Jatropha curcas emb...   676   0.0  

>gi|268525632|gb|FM890887.1|FM890887 FM890887 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000844,
           mRNA sequence
          Length = 443

 Score =  676 bits (341), Expect = 0.0
 Identities = 360/364 (98%), Gaps = 3/364 (0%)
 Strand = Plus / Minus

                                                                       
Query: 162 ggtgcgtgttttccttgtacgggatataattaaggtggctgatgtctttttacgagataa 221
           ||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 426 ggtgcgtgttttc-ttgtacgggatataattaagt--gctgatgtctttttacgagataa 370

                                                                       
Query: 222 aatcgttggttgcattttagaccagaaacgtgaaggaaacgaggcatctaagtctgaggg 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aatcgttggttgcattttagaccagaaacgtgaaggaaacgaggcatctaagtctgaggg 310

                                                                       
Query: 282 ccattcaacattcatgagggtagttaatgggtttcaatatctacgtcaagcggtaaagtt 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccattcaacattcatgagggtagttaatgggtttcaatatctacgtcaagcggtaaagtt 250

                                                                       
Query: 342 agccccagagttgtggactgcaatgcttatacgcatggcactgaagcctgaatttcatag 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agccccagagttgtggactgcaatgcttatacgcatggcactgaagcctgaatttcatag 190

                                                                       
Query: 402 ttttattcttgatattatgtcagccttggtagttcattttaaccataaagttccagagac 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttttattcttgatattatgtcagccttggtagttcattttaaccataaagttccagagac 130

                                                                       
Query: 462 ttcttgggttttcatgtctagacttctgcataagttggtgagaaacgatagattggatga 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ttcttgggttttcatgtctagacttctgcataagttggtgagaaacgatagattggatga 70

               
Query: 522 tcta 525
           ||||
Sbjct: 69  tcta 66