Jatropha Genome Database

JcCA0315371.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0315371.10 - phase: 0 
         (891 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524952|gb|FM896582.1|FM896582 FM896582 Jatropha curcas emb...   365   e-101
gi|268519454|gb|FM887921.1|FM887921 FM887921 Jatropha curcas emb...   176   3e-44

>gi|268524952|gb|FM896582.1|FM896582 FM896582 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003831,
           mRNA sequence
          Length = 529

 Score =  365 bits (184), Expect = e-101
 Identities = 187/188 (99%)
 Strand = Plus / Minus

                                                                       
Query: 704 atgttgtcacaaatgaggaagctgttgaaatgactaaaccaattgcagacccagaggagg 763
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 atgttgtcactaatgaggaagctgttgaaatgactaaaccaattgcagacccagaggagg 470

                                                                       
Query: 764 cagcaaggaggttgttgcaagaggcataccagagaggaagtgcagataatattacctgtg 823
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cagcaaggaggttgttgcaagaggcataccagagaggaagtgcagataatattacctgtg 410

                                                                       
Query: 824 tcgttgtccgcttcttggccaatcaaggtgctacctctcgtagcgctgttggtgttgctt 883
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tcgttgtccgcttcttggccaatcaaggtgctacctctcgtagcgctgttggtgttgctt 350

                   
Query: 884 ctgtgtga 891
           ||||||||
Sbjct: 349 ctgtgtga 342


>gi|268519454|gb|FM887921.1|FM887921 FM887921 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001212,
           mRNA sequence
          Length = 416

 Score =  176 bits (89), Expect = 3e-44
 Identities = 96/97 (98%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                       
Query: 109 gcaagctctcccgggaaaagatcttccatggaagatttttat-gagacaaggattgatgg 167
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 24  gcaagctctcccgggaaaagatcttccatggaagatttttatagagacaaggattgatgg 83

                                                
Query: 168 tgttgatggagagatagttggcctgtttggagtattt 204
           |||||||||||||||||||||||||||||||||||||
Sbjct: 84  tgttgatggagagatagttggcctgtttggagtattt 120