Jatropha Genome Database

JcCA0313541.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0313541.10 + phase: 0 
         (1032 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517382|gb|FM887324.1|FM887324 FM887324 Jatropha curcas emb...    86   9e-17
gi|268518997|gb|FM887464.1|FM887464 FM887464 Jatropha curcas emb...    66   9e-11
gi|268523915|gb|FM890601.1|FM890601 FM890601 Jatropha curcas emb...    66   9e-11

>gi|268517382|gb|FM887324.1|FM887324 FM887324 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000502,
           mRNA sequence
          Length = 565

 Score = 85.7 bits (43), Expect = 9e-17
 Identities = 127/155 (81%)
 Strand = Plus / Minus

                                                                       
Query: 403 ggtatgcctggttttactgcctatgcaggattttatgaggtctcttctcctaagaaagga 462
           |||||||||||  | ||||| ||||| || ||||||||| |   | ||||||||||||||
Sbjct: 544 ggtatgcctggcctaactgcttatgctggtttttatgagattggtgctcctaagaaagga 485

                                                                       
Query: 463 gattatgtctttgtgtctgcagcgtcaggagccgtcggtcagcttgttggtcaatttgcc 522
           || ||||| ||||| || ||||| || || || |||||||  ||||||||||| ||||||
Sbjct: 484 gagtatgtgtttgtttcagcagcttctggtgcagtcggtctacttgttggtcagtttgcc 425

                                              
Query: 523 aagttacatggctgctatgtagttggaagtgctgg 557
           ||| |   ||| |||||||| ||||||||||||||
Sbjct: 424 aagctgactggttgctatgtggttggaagtgctgg 390


>gi|268518997|gb|FM887464.1|FM887464 FM887464 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000670,
            mRNA sequence
          Length = 237

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                             
Query: 1000 ggcaagcaagtgattcgtgtagcttatgaatga 1032
            |||||||||||||||||||||||||||||||||
Sbjct: 222  ggcaagcaagtgattcgtgtagcttatgaatga 190


>gi|268523915|gb|FM890601.1|FM890601 FM890601 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000495,
           mRNA sequence
          Length = 495

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 145/181 (80%), Gaps = 1/181 (0%)
 Strand = Plus / Plus

                                                                       
Query: 583 aagaataagcttggatttgatgaagctttcaactacaaagaagagaccaacctggatgca 642
           ||||| ||| |||| || ||||| |||||||| ||||| |||||| |  |  | ||||||
Sbjct: 8   aagaacaagtttgggttcgatgatgctttcaattacaaggaagagccagatttagatgca 67

                                                                       
Query: 643 gctttgaaaaggtatttccc-agaaggcatagacatctactttgataatgtgggaggaga 701
           ||| | ||||||||||| || |||||||||||| || ||||| || ||||| || ||  |
Sbjct: 68  gctcttaaaaggtattttcctagaaggcatagatatttacttcgaaaatgttggtgggaa 127

                                                                       
Query: 702 catgcttgatgctgcattgctcaacatgaggattcatggccggattgcagtatgtggaat 761
            ||||||||||| |   | |||||||||||||||| ||| || ||||| || ||||||||
Sbjct: 128 aatgcttgatgcagtgctcctcaacatgaggattcgtggtcgaattgctgtttgtggaat 187

            
Query: 762 g 762
           |
Sbjct: 188 g 188