Jatropha Genome Database

JcCA0311501.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0311501.30 - phase: 1 /partial
         (386 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518952|gb|FM887419.1|FM887419 FM887419 Jatropha curcas emb...   569   e-163
gi|268518300|gb|FM888574.1|FM888574 FM888574 Jatropha curcas emb...   274   7e-74

>gi|268518952|gb|FM887419.1|FM887419 FM887419 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000619,
           mRNA sequence
          Length = 538

 Score =  569 bits (287), Expect = e-163
 Identities = 287/287 (100%)
 Strand = Plus / Minus

                                                                       
Query: 100 agagtccaattcgcagtcctagtcctagagataagcgaccttcaataagtgagggtctga 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agagtccaattcgcagtcctagtcctagagataagcgaccttcaataagtgagggtctga 479

                                                                       
Query: 160 aatcgcgtctgggcccccgaattgatgatcaacgctcattgaacaaaggaagattgaggt 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aatcgcgtctgggcccccgaattgatgatcaacgctcattgaacaaaggaagattgaggt 419

                                                                       
Query: 220 ccagttctaggtccaggagtcgtggatcctcactttctagatcttctgatgctgtacccc 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccagttctaggtccaggagtcgtggatcctcactttctagatcttctgatgctgtacccc 359

                                                                       
Query: 280 caaatcatcacagcaaaacaaccagcaggtctaggtcaagctcaccttctggtcagcagc 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 caaatcatcacagcaaaacaaccagcaggtctaggtcaagctcaccttctggtcagcagc 299

                                                          
Query: 340 ggggtttggtttcgtatggtgacatcagtcctgatttgggaacgagg 386
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggggtttggtttcgtatggtgacatcagtcctgatttgggaacgagg 252


>gi|268518300|gb|FM888574.1|FM888574 FM888574 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002013,
           mRNA sequence
          Length = 519

 Score =  274 bits (138), Expect = 7e-74
 Identities = 152/154 (98%), Gaps = 2/154 (1%)
 Strand = Plus / Plus

                                                                       
Query: 232 ccaggagtcgtggatcctcactttctagatcttctgatgctgtacccccaaatcatcaca 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   ccaggagtcgtggatcctcactttctagatcttctgatgctgtacccccaaatcatcaca 67

                                                                       
Query: 292 gcaaaacaaccagcaggtctaggtcaagctcaccttctggtcagcagcggggtttggttt 351
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 68  gcaaaacaaccagca-gtctaggtc-agctcaccttctggtcagcagcggggtttggttt 125

                                             
Query: 352 cgtatggtgacatcagtcctgatttgggaacgag 385
           ||||||||||||||||||||||||||||||||||
Sbjct: 126 cgtatggtgacatcagtcctgatttgggaacgag 159