Jatropha Genome Database

JcCA0311501.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0311501.20 + phase: 0 
         (1026 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521488|gb|FM894240.1|FM894240 FM894240 Jatropha curcas emb...   837   0.0  

>gi|268521488|gb|FM894240.1|FM894240 FM894240 Jatropha curcas embryo
            71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004545,
            mRNA sequence
          Length = 638

 Score =  837 bits (422), Expect = 0.0
 Identities = 424/425 (99%)
 Strand = Plus / Minus

                                                                        
Query: 602  aagcatatagggtcttgaaactaggaggaaaagcctgcttaattggcccggtgtacccaa 661
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 638  aagcatatagggtcttgaaactaggaggaaaagcctgcttaantggcccggtgtacccaa 579

                                                                        
Query: 662  cattttggttgtctcgcttctttgctgatgtttggatgctcttcccaaaggaggaggagt 721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578  cattttggttgtctcgcttctttgctgatgtttggatgctcttcccaaaggaggaggagt 519

                                                                        
Query: 722  acattgaatggtttcaaaaggccgggtttaaggatgttcagctgaagaggattggcccaa 781
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518  acattgaatggtttcaaaaggccgggtttaaggatgttcagctgaagaggattggcccaa 459

                                                                        
Query: 782  aatggtatcgtggtgttcgccgacatggactgatcatgggatgttcagtaacaggagtta 841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458  aatggtatcgtggtgttcgccgacatggactgatcatgggatgttcagtaacaggagtta 399

                                                                        
Query: 842  aacctgcatctggagattctcctttacagcttggtccaaaagaagaggatgtatcaaagc 901
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398  aacctgcatctggagattctcctttacagcttggtccaaaagaagaggatgtatcaaagc 339

                                                                        
Query: 902  cggtgcacccatttgtgttccttctgcgatttgttttgggtgccttggctgcaacgtact 961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338  cggtgcacccatttgtgttccttctgcgatttgttttgggtgccttggctgcaacgtact 279

                                                                        
Query: 962  atgtgttggtcccaatttacatgtggctcaaagatcaaatcgtacctaaaggtagaccaa 1021
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278  atgtgttggtcccaatttacatgtggctcaaagatcaaatcgtacctaaaggtagaccaa 219

                 
Query: 1022 tctga 1026
            |||||
Sbjct: 218  tctga 214