Jatropha Genome Database

JcCA0311471.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0311471.10 - phase: 0 /pseudo/partial
         (933 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525398|gb|FM896040.1|FM896040 FM896040 Jatropha curcas emb...   432   e-121

>gi|268525398|gb|FM896040.1|FM896040 FM896040 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003169,
           mRNA sequence
          Length = 485

 Score =  432 bits (218), Expect = e-121
 Identities = 232/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 130 gacataatctacctatcagataagcgaattgggtctctcaaatttcctgaaactgctcgt 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gacataatctacctatcagataagcgaattgggtctctcaaatttcctgaaactgctcgt 306

                                                                       
Query: 190 tttccaggccttcggactcgggctcttgcacgtgagctatcaggtggggaaggagaagat 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tttccaggccttcggactcgggctcttgcacgtgagctatcaggtggggaaggagaagat 366

                                                                       
Query: 250 cacaggcctttggataatgggttcagctttctttctgatgatgagtctcnnnnnnnctct 309
           |||||||||||||||||||||||||||||||||||||||||||||||||       ||||
Sbjct: 367 cacaggcctttggataatgggttcagctttctttctgatgatgagtctctttttttctct 426

                                                                      
Query: 310 caggataataatgaaaaggatgcagagaaaatagtgaagtttgagacacctttggcggt 368
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 caggataataatgaaaaggatgcagagaaaatagtgaagtttgagacacctttggcggt 485



 Score =  137 bits (69), Expect = 3e-32
 Identities = 69/69 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaatctatttcgagttcaatgttcgtctctagattccctgaaacagtcccaattatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 atggaatctatttcgagttcaatgttcgtctctagattccctgaaacagtcccaattatc 177

                    
Query: 61  aacacctca 69
           |||||||||
Sbjct: 178 aacacctca 186