Jatropha Genome Database
- JcCA0311331.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0311331.20 - phase: 0
(546 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680316|gb|GO246528.1|GO246528 JcrME_RL0072 Expressed seque... 496 e-140
gi|262091205|gb|GT228632.1|GT228632 JC197 Jatropha seeds from fr... 121 9e-28
gi|237680938|gb|GO247063.1|GO247063 JcrME_RL0607 Expressed seque... 113 2e-25
>gi|237680316|gb|GO246528.1|GO246528 JcrME_RL0072 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 586
Score = 496 bits (250), Expect = e-140
Identities = 357/386 (92%), Gaps = 5/386 (1%)
Strand = Plus / Minus
Query: 162 tgacctgatgaactttgtggtcactgttaagcctgatgaaggatactataagaatggcaa 221
||||||||||| |||||| ||||| || | || |||||| | |||| |||||||| ||||
Sbjct: 530 tgacctgatgacctttgtagtcacggt-acgcttgatgacg-ataccataagaattgcaa 473
Query: 222 ttttcaattctcttttcaagtgccagatgtctatcctc-atgaggcaccaaaagtcaagt 280
| ||||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 472 tcttcaatt-tcttttcatgtgccagatgtctatcctccatgagtcaccaaaagtcaagt 414
Query: 281 gccaaacaaaggtttatcatcctaatattgacttggaaggcaatgtgtgcctgaacattc 340
||| ||||| ||| |||||||||||||||||||| |||||||||||| ||||||||| |
Sbjct: 413 gcctaacaacagttgatcatcctaatattgacttgcaaggcaatgtgtacctgaacat-c 355
Query: 341 ttcgagaagactggaaacctgttctaaatataaacaccatcatttacggattatttcatc 400
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 354 ttcgagaagactggaaacctgttctaaatatatacaccatcatttacggattatttcatc 295
Query: 401 tgtttacgcaaccaaatcgcgaggaccctttgaattctgatgcagctgctatgttgagag 460
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 294 tgtttacgcaaccacatcgcgaggaccctttgcattctgatgcagctgctatggtgagag 235
Query: 461 ataatccaagattatttgaatccaatgtaaagaaggccatggctggtggttttataggaa 520
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ataatccaagatcatgtgaatgcaatgtaaagaaggccatggctggtggttttataggaa 175
Query: 521 aaacttattttgctcgctgcttgtag 546
||||||||||||||||||||||||||
Sbjct: 174 aaacttattttgctcgctgcttgtag 149
>gi|262091205|gb|GT228632.1|GT228632 JC197 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL02SE.G07.scf 5', mRNA sequence
Length = 582
Score = 121 bits (61), Expect = 9e-28
Identities = 178/217 (82%)
Strand = Plus / Plus
Query: 253 tatcctcatgaggcaccaaaagtcaagtgccaaacaaaggtttatcatcctaatattgac 312
||||| |||||||||||||| || |||||| | || |||||||||||||| || || |||
Sbjct: 317 tatccacatgaggcaccaaaggttaagtgcaagaccaaggtttatcatcccaacatcgac 376
Query: 313 ttggaaggcaatgtgtgcctgaacattcttcgagaagactggaaacctgttctaaatata 372
|||||||| ||||| ||||| ||||| | |||||||||||||||||||| || || |||
Sbjct: 377 ttggaaggaaatgtctgccttaacatcttgcgagaagactggaaacctgtcctcaacata 436
Query: 373 aacaccatcatttacggattatttcatctgtttacgcaaccaaatcgcgaggaccctttg 432
|| || || || || ||||||| |||||| || ||| |||||||| ||||| ||| |
Sbjct: 437 aatactattatctatggattatatcatcttttcacggaaccaaattatgaggatcctctt 496
Query: 433 aattctgatgcagctgctatgttgagagataatccaa 469
||| |||||| ||||| ||||||||||||| ||||
Sbjct: 497 aatcatgatgctgctgcagtgttgagagataacccaa 533
Score = 71.9 bits (36), Expect = 7e-13
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 65 tcaagaagcaaagtgctggggaattacgtcttcataaagacataagtgagttgaacctgc 124
|||| ||||||| |||||| ||||| ||||||||||| || || |||| | |||||||
Sbjct: 129 tcaaaaagcaaactgctggagaattgcgtcttcataaggatatttctgagctaaacctgc 188
Query: 125 caaaatcatgtaccatatccttcaccaatggaaaggatgacctgatga 172
| ||||| ||| ||||| ||||| ||||||| ||||| ||||||||||
Sbjct: 189 ctaaatcttgtgccataaccttccccaatggcaaggacgacctgatga 236
>gi|237680938|gb|GO247063.1|GO247063 JcrME_RL0607 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 635
Score = 113 bits (57), Expect = 2e-25
Identities = 138/165 (83%)
Strand = Plus / Plus
Query: 253 tatcctcatgaggcaccaaaagtcaagtgccaaacaaaggtttatcatcctaatattgac 312
||||| |||||||||||||| || |||||| | || |||||||||||||| || || |||
Sbjct: 377 tatccacatgaggcaccaaaggttaagtgcaagaccaaggtttatcatcccaacatcgac 436
Query: 313 ttggaaggcaatgtgtgcctgaacattcttcgagaagactggaaacctgttctaaatata 372
|||||||| ||||| ||||| ||||| | |||||||||||||||||||| || || |||
Sbjct: 437 ttggaaggaaatgtctgccttaacatcttgcgagaagactggaaacctgtcctcaacata 496
Query: 373 aacaccatcatttacggattatttcatctgtttacgcaaccaaat 417
|| || || || || ||||||| |||||| || ||| ||||||||
Sbjct: 497 aatactattatctatggattatatcatcttttcacggaaccaaat 541
Score = 71.9 bits (36), Expect = 7e-13
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 65 tcaagaagcaaagtgctggggaattacgtcttcataaagacataagtgagttgaacctgc 124
|||| ||||||| |||||| ||||| ||||||||||| || || |||| | |||||||
Sbjct: 189 tcaaaaagcaaactgctggagaattgcgtcttcataaggatatttctgagctaaacctgc 248
Query: 125 caaaatcatgtaccatatccttcaccaatggaaaggatgacctgatga 172
| ||||| ||| ||||| ||||| ||||||| ||||| ||||||||||
Sbjct: 249 ctaaatcttgtgccataaccttccccaatggcaaggacgacctgatga 296