Jatropha Genome Database
- JcCA0311301.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0311301.30 - phase: 0
(522 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|218687254|gb|GH296534.1|GH296534 JCL984 Jatropha curcas total... 101 8e-22
gi|218687339|gb|GH295993.1|GH295993 JCL442 Jatropha curcas total... 101 8e-22
gi|218687552|gb|GH295599.1|GH295599 JCL48 Jatropha curcas total ... 101 8e-22
gi|237680575|gb|GO246787.1|GO246787 JcrME_RL0331 Expressed seque... 101 8e-22
gi|268525143|gb|FM895785.1|FM895785 FM895785 Jatropha curcas emb... 101 8e-22
gi|268522290|gb|FM894435.1|FM894435 FM894435 Jatropha curcas emb... 94 2e-19
gi|268523883|gb|FM890569.1|FM890569 FM890569 Jatropha curcas emb... 94 2e-19
gi|268517803|gb|FM893178.1|FM893178 FM893178 Jatropha curcas emb... 86 5e-17
gi|268521500|gb|FM894252.1|FM894252 FM894252 Jatropha curcas emb... 58 1e-08
gi|268524156|gb|FM894835.1|FM894835 FM894835 Jatropha curcas emb... 54 2e-07
gi|237680302|gb|GO246486.1|GO246486 JcrME_RL0030 Expressed seque... 52 6e-07
gi|268525210|gb|FM895852.1|FM895852 FM895852 Jatropha curcas emb... 48 1e-05
>gi|218687254|gb|GH296534.1|GH296534 JCL984 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 844
Score = 101 bits (51), Expect = 8e-22
Identities = 167/203 (82%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 29 aatccgtctatgacttcactgtcaaggatgctgaggggaaggacttagatctcggcatat 88
|||| ||| ||||||||||||| ||||||||| |||||| || | |||||| ||| ||
Sbjct: 202 aatcagtccatgacttcactgttaaggatgctagggggaacgatgttgatctcagcacat 261
Query: 89 tcaaaggaaaagt-cttattaattgttaatgttgcttcaaaatgtggaatgaccaactct 147
||| ||||| || || |||| ||||||||||||||||| ||||||| ||||||| ||
Sbjct: 262 acaagggaaaggttctcatta-ttgttaatgttgcttcacaatgtggcttgaccaattcc 320
Query: 148 aattacacagagctcaatcagttatatgagaagtacaaagacaaaggtcttgagatactg 207
|| ||||| || || | ||||||||| |||||||||| || ||||| | ||||| |||
Sbjct: 321 aactacactgaactgactcagttataccagaagtacaaggatcaaggtttggagattctg 380
Query: 208 gcatttccatgcaatcaatttgg 230
|| ||||||||||||||||||||
Sbjct: 381 gcttttccatgcaatcaatttgg 403
>gi|218687339|gb|GH295993.1|GH295993 JCL442 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 844
Score = 101 bits (51), Expect = 8e-22
Identities = 167/203 (82%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 29 aatccgtctatgacttcactgtcaaggatgctgaggggaaggacttagatctcggcatat 88
|||| ||| ||||||||||||| ||||||||| |||||| || | |||||| ||| ||
Sbjct: 202 aatcagtccatgacttcactgttaaggatgctagggggaacgatgttgatctcagcacat 261
Query: 89 tcaaaggaaaagt-cttattaattgttaatgttgcttcaaaatgtggaatgaccaactct 147
||| ||||| || || |||| ||||||||||||||||| ||||||| ||||||| ||
Sbjct: 262 acaagggaaaggttctcatta-ttgttaatgttgcttcacaatgtggcttgaccaattcc 320
Query: 148 aattacacagagctcaatcagttatatgagaagtacaaagacaaaggtcttgagatactg 207
|| ||||| || || | ||||||||| |||||||||| || ||||| | ||||| |||
Sbjct: 321 aactacactgaactgactcagttataccagaagtacaaggatcaaggtttggagattctg 380
Query: 208 gcatttccatgcaatcaatttgg 230
|| ||||||||||||||||||||
Sbjct: 381 gcttttccatgcaatcaatttgg 403
>gi|218687552|gb|GH295599.1|GH295599 JCL48 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 844
Score = 101 bits (51), Expect = 8e-22
Identities = 167/203 (82%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 29 aatccgtctatgacttcactgtcaaggatgctgaggggaaggacttagatctcggcatat 88
|||| ||| ||||||||||||| ||||||||| |||||| || | |||||| ||| ||
Sbjct: 202 aatcagtccatgacttcactgttaaggatgctagggggaacgatgttgatctcagcacat 261
Query: 89 tcaaaggaaaagt-cttattaattgttaatgttgcttcaaaatgtggaatgaccaactct 147
||| ||||| || || |||| ||||||||||||||||| ||||||| ||||||| ||
Sbjct: 262 acaagggaaaggttctcatta-ttgttaatgttgcttcacaatgtggcttgaccaattcc 320
Query: 148 aattacacagagctcaatcagttatatgagaagtacaaagacaaaggtcttgagatactg 207
|| ||||| || || | ||||||||| |||||||||| || ||||| | ||||| |||
Sbjct: 321 aactacactgaactgactcagttataccagaagtacaaggatcaaggtttggagattctg 380
Query: 208 gcatttccatgcaatcaatttgg 230
|| ||||||||||||||||||||
Sbjct: 381 gcttttccatgcaatcaatttgg 403
>gi|237680575|gb|GO246787.1|GO246787 JcrME_RL0331 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 700
Score = 101 bits (51), Expect = 8e-22
Identities = 167/203 (82%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 29 aatccgtctatgacttcactgtcaaggatgctgaggggaaggacttagatctcggcatat 88
|||| ||| ||||||||||||| ||||||||| |||||| || | |||||| ||| ||
Sbjct: 241 aatcagtccatgacttcactgttaaggatgctagggggaacgatgttgatctcagcacat 300
Query: 89 tcaaaggaaaagt-cttattaattgttaatgttgcttcaaaatgtggaatgaccaactct 147
||| ||||| || || |||| ||||||||||||||||| ||||||| ||||||| ||
Sbjct: 301 acaagggaaaggttctcatta-ttgttaatgttgcttcacaatgtggcttgaccaattcc 359
Query: 148 aattacacagagctcaatcagttatatgagaagtacaaagacaaaggtcttgagatactg 207
|| ||||| || || | ||||||||| |||||||||| || ||||| | ||||| |||
Sbjct: 360 aactacactgaactgactcagttataccagaagtacaaggatcaaggtttggagattctg 419
Query: 208 gcatttccatgcaatcaatttgg 230
|| ||||||||||||||||||||
Sbjct: 420 gcttttccatgcaatcaatttgg 442
>gi|268525143|gb|FM895785.1|FM895785 FM895785 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002771,
mRNA sequence
Length = 650
Score = 101 bits (51), Expect = 8e-22
Identities = 167/203 (82%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 29 aatccgtctatgacttcactgtcaaggatgctgaggggaaggacttagatctcggcatat 88
|||| ||| ||||||||||||| ||||||||| |||||| || | |||||| ||| ||
Sbjct: 217 aatcagtccatgacttcactgttaaggatgctagggggaacgatgttgatctcagcacat 276
Query: 89 tcaaaggaaaagt-cttattaattgttaatgttgcttcaaaatgtggaatgaccaactct 147
||| ||||| || || |||| ||||||||||||||||| ||||||| ||||||| ||
Sbjct: 277 acaagggaaaggttctcatta-ttgttaatgttgcttcacaatgtggcttgaccaattcc 335
Query: 148 aattacacagagctcaatcagttatatgagaagtacaaagacaaaggtcttgagatactg 207
|| ||||| || || | ||||||||| |||||||||| || ||||| | ||||| |||
Sbjct: 336 aactacactgaactgactcagttataccagaagtacaaggatcaaggtttggagattctg 395
Query: 208 gcatttccatgcaatcaatttgg 230
|| ||||||||||||||||||||
Sbjct: 396 gcttttccatgcaatcaatttgg 418
>gi|268522290|gb|FM894435.1|FM894435 FM894435 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004787,
mRNA sequence
Length = 640
Score = 93.7 bits (47), Expect = 2e-19
Identities = 166/203 (81%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 29 aatccgtctatgacttcactgtcaaggatgctgaggggaaggacttagatctcggcatat 88
|||| ||| ||||||||||||| ||||||||| |||||| || | |||||| ||| ||
Sbjct: 217 aatcagtccatgacttcactgttaaggatgctagggggaacgatgttgatctcagcacat 276
Query: 89 tcaaaggaaaagt-cttattaattgttaatgttgcttcaaaatgtggaatgaccaactct 147
|| ||||| || || |||| ||||||||||||||||| ||||||| ||||||| ||
Sbjct: 277 acaggggaaaggttctcatta-ttgttaatgttgcttcacaatgtggcttgaccaattcc 335
Query: 148 aattacacagagctcaatcagttatatgagaagtacaaagacaaaggtcttgagatactg 207
|| ||||| || || | ||||||||| |||||||||| || ||||| | ||||| |||
Sbjct: 336 aactacactgaactgactcagttataccagaagtacaaggatcaaggtttggagattctg 395
Query: 208 gcatttccatgcaatcaatttgg 230
|| ||||||||||||||||||||
Sbjct: 396 gcttttccatgcaatcaatttgg 418
>gi|268523883|gb|FM890569.1|FM890569 FM890569 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000457,
mRNA sequence
Length = 480
Score = 93.7 bits (47), Expect = 2e-19
Identities = 166/203 (81%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 29 aatccgtctatgacttcactgtcaaggatgctgaggggaaggacttagatctcggcatat 88
|||| ||| ||||||||||||| ||||||||| |||||| || | |||||| ||| ||
Sbjct: 216 aatcagtccatgacttcactgttaaggatgctagggggaacgatgttgatctcagcacat 275
Query: 89 tcaaaggaaaagt-cttattaattgttaatgttgcttcaaaatgtggaatgaccaactct 147
||| ||||| || || |||| ||||||||||||||||| ||||||| ||||||| ||
Sbjct: 276 acaagggaaaggttctcatta-ttgttaatgttgcttcacaatgtggcttgaccaattcc 334
Query: 148 aattacacagagctcaatcagttatatgagaagtacaaagacaaaggtcttgagatactg 207
|| ||||| || || | ||||||||| |||||||||| || || || | ||||| |||
Sbjct: 335 aactacactgaactgactcagttataccagaagtacaaggatcaaagtttggagattctg 394
Query: 208 gcatttccatgcaatcaatttgg 230
|| ||||||||||||||||||||
Sbjct: 395 gcttttccatgcaatcaatttgg 417
>gi|268517803|gb|FM893178.1|FM893178 FM893178 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_003910,
mRNA sequence
Length = 612
Score = 85.7 bits (43), Expect = 5e-17
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 109 attgttaatgttgcttcaaaatgtggaatgaccaactctaattacacagagctcaatcag 168
|||||||||||||||||| ||||||| ||||||| || || ||||| || || | ||||
Sbjct: 564 attgttaatgttgcttcacaatgtggcttgaccaattccaactacactgaactgactcag 505
Query: 169 ttatatgagaagtacaaagacaaaggtcttgagatactggcatttccatgcaatcaattt 228
|||| |||||||||| || ||||| | ||||| ||||| ||||||||||||||||||
Sbjct: 504 ntataccagaagtacaaggatcaaggtttggagattctggcttttccatgcaatcaattt 445
Query: 229 gg 230
||
Sbjct: 444 gg 443
>gi|268521500|gb|FM894252.1|FM894252 FM894252 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004557,
mRNA sequence
Length = 670
Score = 58.0 bits (29), Expect = 1e-08
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 123 ttcaaaatgtggaatgaccaactctaattacacagagctcaatcagttatatgagaagta 182
|||| ||||||| ||||||| || || ||||| || || | ||||||||| |||||||
Sbjct: 598 ttcacaatgtggcttgaccaattccaactacactgaactgactcagttataccagaagta 539
Query: 183 caaagacaaaggtcttgagatactggcatttccatgcaatcaatttgg 230
||| || ||||| | ||||| ||||| |||||||||||||||| |||
Sbjct: 538 caaggatcaaggtttggagattctggcttttccatgcaatcaatntgg 491
>gi|268524156|gb|FM894835.1|FM894835 FM894835 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000721,
mRNA sequence
Length = 602
Score = 54.0 bits (27), Expect = 2e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 178 aagtacaaagacaaaggtcttgagatactggcatttccatgcaatcaattt 228
|||||||| ||| |||||||||| || |||| ||||||||||||||||||
Sbjct: 269 aagtacaaggaccaaggtcttgaaatcttggcttttccatgcaatcaattt 319
>gi|237680302|gb|GO246486.1|GO246486 JcrME_RL0030 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 662
Score = 52.0 bits (26), Expect = 6e-07
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 104 tattaattgttaatgttgcttcaaaatgtggaatgaccaactctaattacacagagctca 163
|||| ||||| |||||||||||||||||||| |||| || |||||||||||||||
Sbjct: 347 tattgattgtcaatgttgcttcaaaatgtggtttgacggcatcaaattacacagagctct 406
Query: 164 atcagttatatgagaagtacaa 185
|| ||||||||||||||||
Sbjct: 407 cacacatatatgagaagtacaa 428
>gi|268525210|gb|FM895852.1|FM895852 FM895852 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002848,
mRNA sequence
Length = 454
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 199 gagatactggcatttccatgcaatcaatttgg 230
||||| ||||| ||||||||||||||||||||
Sbjct: 39 gagattctggcctttccatgcaatcaatttgg 70