Jatropha Genome Database

JcCA0310931.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0310931.10 - phase: 0 /pseudo
         (1469 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522952|gb|FM896395.1|FM896395 FM896395 Jatropha curcas emb...   954   0.0  

>gi|268522952|gb|FM896395.1|FM896395 FM896395 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003611,
           mRNA sequence
          Length = 495

 Score =  954 bits (481), Expect = 0.0
 Identities = 495/497 (99%), Gaps = 2/497 (0%)
 Strand = Plus / Plus

                                                                       
Query: 393 cacaagtcagattgcgagtaatcttggaattccaagaattgctttcaatgggttttcatg 452
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 1   cacaagtcagattgcgagtaatct-ggaattccaagaattgctttca-tgggttttcatg 58

                                                                       
Query: 453 cttttgtatgatgtgtatgcactgcatatacagctctcccaagattcttgaaaatgtaaa 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  cttttgtatgatgtgtatgcactgcatatacagctctcccaagattcttgaaaatgtaaa 118

                                                                       
Query: 513 atctgaatacgagtatttcgttctgcctggattgcctcatcgtatagaactaaccaaaaa 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atctgaatacgagtatttcgttctgcctggattgcctcatcgtatagaactaaccaaaaa 178

                                                                       
Query: 573 ccagcttccacaatcaatgcatagcaatatgggtaggtttactgagcaaataggagttgc 632
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ccagcttccacaatcaatgcatagcaatatgggtaggtttactgagcaaataggagttgc 238

                                                                       
Query: 633 tgaaatggttacttacggtattattgttaattcttttgaagaattagagccaacatatgt 692
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgaaatggttacttacggtattattgttaattcttttgaagaattagagccaacatatgt 298

                                                                       
Query: 693 tcaagaattcaagaaagcaagaggaaataataaggtttggtgtattggtccagtttcact 752
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcaagaattcaagaaagcaagaggaaataataaggtttggtgtattggtccagtttcact 358

                                                                       
Query: 753 ttataataaagataagttagataaggttcagagaggagataaggcctcaattgatgaaca 812
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttataataaagataagttagataaggttcagagaggagataaggcctcaattgatgaaca 418

                                                                       
Query: 813 agaatgtttaaattggcttgatttacaaaagcaagattctgttttatatgtttgttttgg 872
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agaatgtttaaattggcttgatttacaaaagcaagattctgttttatatgtttgttttgg 478

                            
Query: 873 tagtctttgtaatttag 889
           |||||||||||||||||
Sbjct: 479 tagtctttgtaatttag 495