Jatropha Genome Database
- JcCA0310901.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0310901.20 + phase: 2 /pseudo/partial
(578 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268524610|gb|FM895308.1|FM895308 FM895308 Jatropha curcas emb... 668 0.0
gi|268525207|gb|FM895849.1|FM895849 FM895849 Jatropha curcas emb... 525 e-149
gi|268526214|gb|FM891470.1|FM891470 FM891470 Jatropha curcas emb... 385 e-107
gi|237679872|gb|GO247177.1|GO247177 JcrME_RL0721 Expressed seque... 307 7e-84
gi|268521148|gb|FM891867.1|FM891867 FM891867 Jatropha curcas emb... 305 3e-83
gi|268519331|gb|FM887798.1|FM887798 FM887798 Jatropha curcas emb... 301 5e-82
gi|268518444|gb|FM888718.1|FM888718 FM888718 Jatropha curcas emb... 281 4e-76
gi|268524926|gb|FM895624.1|FM895624 FM895624 Jatropha curcas emb... 240 1e-63
gi|237680722|gb|GO246873.1|GO246873 JcrME_RL0417 Expressed seque... 212 3e-55
gi|268517028|gb|FM892580.1|FM892580 FM892580 Jatropha curcas emb... 204 8e-53
gi|237679856|gb|GO247161.1|GO247161 JcrME_RL0705 Expressed seque... 198 5e-51
gi|237680778|gb|GO246929.1|GO246929 JcrME_RL0473 Expressed seque... 196 2e-50
gi|237680740|gb|GO246952.1|GO246952 JcrME_RL0496 Expressed seque... 192 3e-49
gi|268523263|gb|FM894029.1|FM894029 FM894029 Jatropha curcas emb... 172 3e-43
gi|237680561|gb|GO246773.1|GO246773 JcrME_RL0317 Expressed seque... 157 2e-38
gi|268517711|gb|FM893086.1|FM893086 FM893086 Jatropha curcas emb... 151 1e-36
gi|218687587|gb|GH296180.1|GH296180 JCL629 Jatropha curcas total... 109 4e-24
gi|218687752|gb|GH295786.1|GH295786 JCL235 Jatropha curcas total... 109 4e-24
gi|268523312|gb|FM894078.1|FM894078 FM894078 Jatropha curcas emb... 98 1e-20
gi|268526358|gb|FM891614.1|FM891614 FM891614 Jatropha curcas emb... 94 2e-19
gi|268523389|gb|FM893712.1|FM893712 FM893712 Jatropha curcas emb... 62 7e-10
gi|268517147|gb|FM893495.1|FM893495 FM893495 Jatropha curcas emb... 54 2e-07
gi|268523892|gb|FM890578.1|FM890578 FM890578 Jatropha curcas emb... 54 2e-07
>gi|268524610|gb|FM895308.1|FM895308 FM895308 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002115,
mRNA sequence
Length = 541
Score = 668 bits (337), Expect = 0.0
Identities = 352/356 (98%), Gaps = 1/356 (0%)
Strand = Plus / Minus
Query: 224 gcattcaggacaaaggtttttcacccaaatattaacagtaatggcagcatttgccttgac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcattcaggacaaaggtttttcacccaaatattaacagtaatggcagcatttgccttgac 482
Query: 284 attctaaaggagcagtggagcccagccctg-acaatatctaaggtgttgctctccatatg 342
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 481 attttaaaggagcagtggagcccagccctggacaatatctaaggtgttgctctccatatg 422
Query: 343 ttccctcttgacggacccaaacccagatgatcccttggtgccagaaattgctcacatgta 402
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 421 ttccctcttgacggacccaaacccagatgatcctntggtgccagaaattgctcacatgta 362
Query: 403 caagacagacagggccaagtacgaggcaactgctaggagctggacacagaagtatgccat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caagacagacagggccaagtacgaggcaactgctaggagctggacacagaagtatgccat 302
Query: 463 gggatagctcagtctatggttgggagatttagatgtcaatcattgttgtgtacaaatgat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gggatagctcagtctatggttgggagatttagatgtcaatcattgttgtgtacaaatgat 242
Query: 523 gtgtgttttcccatgtctaatgctctctgttatgaacaaatgaagagtcgatttac 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgtgttttcccatgtctaatgctctctgttatgaacaaatgaagagtcgatttac 186
>gi|268525207|gb|FM895849.1|FM895849 FM895849 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002845,
mRNA sequence
Length = 448
Score = 525 bits (265), Expect = e-149
Identities = 265/265 (100%)
Strand = Plus / Minus
Query: 314 acaatatctaaggtgttgctctccatatgttccctcttgacggacccaaacccagatgat 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acaatatctaaggtgttgctctccatatgttccctcttgacggacccaaacccagatgat 389
Query: 374 cccttggtgccagaaattgctcacatgtacaagacagacagggccaagtacgaggcaact 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cccttggtgccagaaattgctcacatgtacaagacagacagggccaagtacgaggcaact 329
Query: 434 gctaggagctggacacagaagtatgccatgggatagctcagtctatggttgggagattta 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gctaggagctggacacagaagtatgccatgggatagctcagtctatggttgggagattta 269
Query: 494 gatgtcaatcattgttgtgtacaaatgatgtgtgttttcccatgtctaatgctctctgtt 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gatgtcaatcattgttgtgtacaaatgatgtgtgttttcccatgtctaatgctctctgtt 209
Query: 554 atgaacaaatgaagagtcgatttac 578
|||||||||||||||||||||||||
Sbjct: 208 atgaacaaatgaagagtcgatttac 184
>gi|268526214|gb|FM891470.1|FM891470 FM891470 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001769,
mRNA sequence
Length = 532
Score = 385 bits (194), Expect = e-107
Identities = 338/386 (87%)
Strand = Plus / Plus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggcatcgaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 188
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
|||||||| || || || || || |||||||| || |||||||||||||| |||||||||
Sbjct: 189 tgcagcgcaggccctgttgcggaagacatgttccattggcaagcaacaattatgggtcct 248
Query: 143 cctgacagtccttacactggaggcgtgtttctagttactattcattttcctcctgattat 202
||||| ||||| || | || || ||||||||||| || |||||||||||||| || |||
Sbjct: 249 cctgatagtccatatgcaggtggagtgtttctagtgacgattcattttcctccagactat 308
Query: 203 ccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatattaacagt 262
|||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 309 ccatttaaaccaccgaaggttgcattcaggacaaaggtctttcaccccaatatcaacagc 368
Query: 263 aatggcagcatttgccttgacattctaaaggagcagtggagcccagccctgacaatatct 322
||||| |||||||||||||| ||| | ||||||||||||||||| ||||| || || ||
Sbjct: 369 aatggtagcatttgccttgatattttgaaggagcagtggagccctgcccttaccatttcc 428
Query: 323 aaggtgttgctctccatatgttccctcttgacggacccaaacccagatgatcccttggtg 382
||||||||||| || || ||||| || |||||||||||||| || || ||||| ||||||
Sbjct: 429 aaggtgttgctttcaatttgttctctattgacggacccaaatcctgacgatccgttggtg 488
Query: 383 ccagaaattgctcacatgtacaagac 408
||||||||||| |||||||| |||||
Sbjct: 489 ccagaaattgcccacatgtataagac 514
>gi|237679872|gb|GO247177.1|GO247177 JcrME_RL0721 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 650
Score = 307 bits (155), Expect = 7e-84
Identities = 372/443 (83%), Gaps = 1/443 (0%)
Strand = Plus / Plus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
||||| || ||||||||||||||||| ||||||||| | |||||||||||||| || ||
Sbjct: 77 atggcgtcgaagcggatcttgaaggaactcaaggatttacagaaggatcctcccacatca 136
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
|||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 137 tgcagcgctggtcccgttgctgaagacatgtttcattggcaagctacgatcatgggtccc 196
Query: 143 cctgacagtccttacactggaggcgtgtttctagttactattcattttcctcctgattat 202
||||||||||| || | || || || || || |||||||||||||| ||||| ||||||
Sbjct: 197 cctgacagtccatatgcagggggtgttttccttgttactattcatttccctccggattat 256
Query: 203 ccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatattaacagt 262
||||||||||| || ||||| || ||||| |||||||| || |||||||||||||||||
Sbjct: 257 ccatttaagcctcccaaggtggctttcagaacaaaggtattccacccaaatattaacagc 316
Query: 263 aatggcagcatttgccttgacattctaaaggagcagtggagcccagccctgacaatatct 322
|| || |||||||| |||||||| | |||||||| |||||||| || || || ||||||
Sbjct: 317 aacgggagcatttgtcttgacatattgaaggagcaatggagccctgctctaaccatatct 376
Query: 323 aaggtgttgctctccatatgttccctcttgacggacccaaacccagatgatcccttggtg 382
||||||||||| || || ||||| | |||||||| || || || |||||||| || |||
Sbjct: 377 aaggtgttgctttcaatttgttctttgttgacggatcccaatcctgatgatccgttagtg 436
Query: 383 ccagaaattgctcacatgtacaagacagacagggccaagtacgaggcaactgctaggagc 442
||||| || || ||||||||||||||||||||| ||||| ||| |||| ||||| |||
Sbjct: 437 ccagagatagcacacatgtacaagacagacaggaataagtatgagacaaccgctagaagc 496
Query: 443 tggacacagaagtatgccatggg 465
||||| || |||||||| |||||
Sbjct: 497 tggactca-aagtatgcaatggg 518
>gi|268521148|gb|FM891867.1|FM891867 FM891867 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002266,
mRNA sequence
Length = 352
Score = 305 bits (154), Expect = 3e-83
Identities = 250/282 (88%)
Strand = Plus / Plus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atggcatcgaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 130
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
|||||||| || || || || || |||||||| || |||||||||||||| |||||||||
Sbjct: 131 tgcagcgcaggccctgttgcggaagacatgttccattggcaagcaacaattatgggtcct 190
Query: 143 cctgacagtccttacactggaggcgtgtttctagttactattcattttcctcctgattat 202
||||| ||||| || | || || ||||||||||| || |||||||||||||| || |||
Sbjct: 191 cctgatagtccatatgcaggtggagtgtttctagtgacgattcattttcctccagactat 250
Query: 203 ccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatattaacagt 262
|||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 251 ccatttaaaccaccgaaggttgcattcaggacaaaggtctttcaccccaatatcaacagc 310
Query: 263 aatggcagcatttgccttgacattctaaaggagcagtggagc 304
||||| |||||||||||||| ||| | |||||||||||||||
Sbjct: 311 aatggtagcatttgccttgatattttgaaggagcagtggagc 352
>gi|268519331|gb|FM887798.1|FM887798 FM887798 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001065,
mRNA sequence
Length = 538
Score = 301 bits (152), Expect = 5e-82
Identities = 356/424 (83%)
Strand = Plus / Plus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
||||| || ||||||||||||||||| ||||||||| | |||||||||||||| || ||
Sbjct: 68 atggcgtcgaagcggatcttgaaggaactcaaggatttacagaaggatcctcccacatca 127
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
|||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 128 tgcagcgctggtcccgttgctgaagacatgtttcattggcaagctacgatcatgggtccc 187
Query: 143 cctgacagtccttacactggaggcgtgtttctagttactattcattttcctcctgattat 202
||||||||||| || | || || || || || |||||||||||||| ||||| ||||||
Sbjct: 188 cctgacagtccatatgcagggggtgttttccttgttactattcatttccctccggattat 247
Query: 203 ccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatattaacagt 262
||||||||||| || ||||| || ||||| |||||||| || |||||||||||||||||
Sbjct: 248 ccatttaagcctcccaaggtggctttcagaacaaaggtattccacccaaatattaacagc 307
Query: 263 aatggcagcatttgccttgacattctaaaggagcagtggagcccagccctgacaatatct 322
|| || |||||||| |||||||| | |||||||| |||||||| || || || ||||||
Sbjct: 308 aacgggagcatttgtcttgacatattgaaggagcaatggagccctgctctaaccatatct 367
Query: 323 aaggtgttgctctccatatgttccctcttgacggacccaaacccagatgatcccttggtg 382
||||||||||| || || ||||| | |||||||| || || || |||||||| || |||
Sbjct: 368 aaggtgttgctttcaatttgttctttgttgacggatcccaatcctgatgatccgttagtg 427
Query: 383 ccagaaattgctcacatgtacaagacagacagggccaagtacgaggcaactgctaggagc 442
||||| || || ||||||||||||||||||||| ||||| ||| |||| ||||| |||
Sbjct: 428 ccagagatagcacacatgtacaagacagacaggaataagtatgagacaaccgctagaagc 487
Query: 443 tgga 446
||||
Sbjct: 488 tgga 491
>gi|268518444|gb|FM888718.1|FM888718 FM888718 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002180,
mRNA sequence
Length = 457
Score = 281 bits (142), Expect = 4e-76
Identities = 259/298 (86%)
Strand = Plus / Plus
Query: 168 tgtttctagttactattcattttcctcctgattatccatttaagccacctaaggttgcat 227
|||||||||| || |||||||||||||| || ||||||||||| ||||| ||||||||||
Sbjct: 1 tgtttctagtgacgattcattttcctccagactatccatttaaaccaccgaaggttgcat 60
Query: 228 tcaggacaaaggtttttcacccaaatattaacagtaatggcagcatttgccttgacattc 287
||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct: 61 tcaggacaaaggtctttcaccccaatatcaacagcaatggtagcatttgccttgatattt 120
Query: 288 taaaggagcagtggagcccagccctgacaatatctaaggtgttgctctccatatgttccc 347
| ||||||||||||||||| ||||| || || || ||||||||||| || || ||||| |
Sbjct: 121 tgaaggagcagtggagccctgcccttaccatttccaaggtgttgctttcaatttgttctc 180
Query: 348 tcttgacggacccaaacccagatgatcccttggtgccagaaattgctcacatgtacaaga 407
| |||||||||||||| || || ||||| ||||||||||||||||| |||||||| ||||
Sbjct: 181 tattgacggacccaaatcctgacgatccgttggtgccagaaattgcccacatgtataaga 240
Query: 408 cagacagggccaagtacgaggcaactgctaggagctggacacagaagtatgccatggg 465
| || ||| ||| ||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct: 241 ctgataggagcaaatacgaggcaacagcaaggagctggacccagaagtatgctatggg 298
>gi|268524926|gb|FM895624.1|FM895624 FM895624 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002576,
mRNA sequence
Length = 674
Score = 240 bits (121), Expect = 1e-63
Identities = 304/365 (83%)
Strand = Plus / Plus
Query: 101 gctgaggacatgtttcactggcaagcaacaataatgggtcctcctgacagtccttacact 160
||||| ||||||||||| |||||||| || || |||||||| ||||||||||| || |
Sbjct: 6 gctgaagacatgtttcattggcaagctacgatcatgggtccccctgacagtccatatgca 65
Query: 161 ggaggcgtgtttctagttactattcattttcctcctgattatccatttaagccacctaag 220
|| || || || || |||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct: 66 gggggtgttttccttgttactattcatttccctccggattatccatttaagcctcccaag 125
Query: 221 gttgcattcaggacaaaggtttttcacccaaatattaacagtaatggcagcatttgcctt 280
|| || ||||| |||||||| || ||||||||||||||||| || || |||||||| |||
Sbjct: 126 gtggctttcagaacaaaggtattccacccaaatattaacagcaacgggagcatttgtctt 185
Query: 281 gacattctaaaggagcagtggagcccagccctgacaatatctaaggtgttgctctccata 340
||||| | |||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 186 gacatattgaaggagcaatggagccctgctctaaccatatctaaggtgttgctttcaatt 245
Query: 341 tgttccctcttgacggacccaaacccagatgatcccttggtgccagaaattgctcacatg 400
||||| | |||||||| || || || |||||||| || |||||||| || || ||||||
Sbjct: 246 tgttctttgttgacggatcccaatcctgatgatccgttagtgccagagatagcacacatg 305
Query: 401 tacaagacagacagggccaagtacgaggcaactgctaggagctggacacagaagtatgcc 460
||||||||||||||| ||||| ||| |||| ||||| |||||||| || ||||||||
Sbjct: 306 tacaagacagacaggaataagtatgagacaaccgctagaagctggactcaaaagtatgca 365
Query: 461 atggg 465
|||||
Sbjct: 366 atggg 370
>gi|237680722|gb|GO246873.1|GO246873 JcrME_RL0417 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 600
Score = 212 bits (107), Expect = 3e-55
Identities = 263/311 (84%), Gaps = 3/311 (0%)
Strand = Plus / Plus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
||||| || ||||||||||||||||| ||||||||| | |||||||||||||| || ||
Sbjct: 121 atggcgtcgaagcggatcttgaaggaactcaaggatttacagaaggatcctcccacatca 180
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
|||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 181 tgcagcgctggtcccgttgctgaagacatgtttcattggcaagctacgatcatgggtccc 240
Query: 143 cctgacagtccttacactggaggcgtgtttctagttactattcattttcctcctgattat 202
||||||||||| || | || || || || || |||||||||||||| ||||| ||||||
Sbjct: 241 cctgacagtccatatgcagggggtgttttccttgttactattcatttccctccggattat 300
Query: 203 ccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatattaacagt 262
||||||||||| || ||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 301 ccatttaagcctcccaaggtggctttcagaac-aaggtattccacccaaatattaacag- 358
Query: 263 aatggcagcatttgccttgacattctaaaggagcagtggagcccagccctgacaatatct 322
| || |||||||| |||||||| | |||||||| |||||||| || || || ||||||
Sbjct: 359 cacgggagcatttgtcttgacatattgaaggagca-tggagccctgctctaaccatatct 417
Query: 323 aaggtgttgct 333
|||||||||||
Sbjct: 418 aaggtgttgct 428
>gi|268517028|gb|FM892580.1|FM892580 FM892580 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003173,
mRNA sequence
Length = 553
Score = 204 bits (103), Expect = 8e-53
Identities = 259/311 (83%)
Strand = Plus / Plus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
|||||||||||||| || |||||||| ||||||||| | ||||| ||||| ||||| |||
Sbjct: 199 atggcttccaagcgtattttgaaggaactcaaggatttgcagaaagatccacctacttct 258
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
||||| || ||||| |||||||| |||||||| |||||||||||||| || ||||| ||
Sbjct: 259 tgcagtgcaggtcctgtagctgaagacatgttccactggcaagcaaccatcatgggacca 318
Query: 143 cctgacagtccttacactggaggcgtgtttctagttactattcattttcctcctgattat 202
|||| ||||| || | ||||| || |||||||| ||||| ||||||||||| ||||||
Sbjct: 319 actgatagtccatatgcaggaggtgtatttctagtcactatccattttcctccagattat 378
Query: 203 ccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatattaacagt 262
|| || ||||| || ||||||||||| ||||| ||||| ||||| ||||| || ||||||
Sbjct: 379 cctttcaagcctccgaaggttgcatttaggaccaaggtgtttcatccaaacataaacagt 438
Query: 263 aatggcagcatttgccttgacattctaaaggagcagtggagcccagccctgacaatatct 322
||||| |||||||| ||||| || || || || || |||||||| || || || || |||
Sbjct: 439 aatggaagcatttgtcttgatatcctcaaagaacaatggagccctgctctcaccatttct 498
Query: 323 aaggtgttgct 333
||||| |||||
Sbjct: 499 aaggtattgct 509
>gi|237679856|gb|GO247161.1|GO247161 JcrME_RL0705 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 700
Score = 198 bits (100), Expect = 5e-51
Identities = 220/260 (84%)
Strand = Plus / Plus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
|||||||||||||| || |||||||| ||||||||| | ||||| ||||| ||||| |||
Sbjct: 294 atggcttccaagcgtattttgaaggaactcaaggatttgcagaaagatccacctacttct 353
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
||||| || ||||| |||||||| |||||||| |||||||||||||| || ||||| ||
Sbjct: 354 tgcagtgcaggtcctgtagctgaagacatgttccactggcaagcaaccatcatgggacca 413
Query: 143 cctgacagtccttacactggaggcgtgtttctagttactattcattttcctcctgattat 202
|||| ||||| || | ||||| || |||||||| ||||| ||||||||||| ||||||
Sbjct: 414 actgatagtccatatgcaggaggtgtatttctagtcactatccattttcctccagattat 473
Query: 203 ccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatattaacagt 262
|| || ||||| || ||||||||||| ||||| ||||| ||||| ||||| || ||||||
Sbjct: 474 cctttcaagcctccgaaggttgcatttaggaccaaggtgtttcatccaaacataaacagt 533
Query: 263 aatggcagcatttgccttga 282
||||| |||||||| |||||
Sbjct: 534 aatggaagcatttgtcttga 553
>gi|237680778|gb|GO246929.1|GO246929 JcrME_RL0473 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 585
Score = 196 bits (99), Expect = 2e-50
Identities = 238/283 (84%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
||||| || ||||||||||||||||| ||||||||| | |||||||||||||| || ||
Sbjct: 70 atggcgtcgaagcggatcttgaaggaactcaaggatttacagaaggatcctcccacatca 129
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
|||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 130 tgcagcgctggtcccgttgctgaagacatgtttcattggcaagctacgatcatgggtccc 189
Query: 143 cctgacagtccttacactggaggcgtgtttctagttactattcattttcctcctgattat 202
||||||||||| || | || || || || || |||||||||||||| ||||| ||||||
Sbjct: 190 cctgacagtccatatgcagggggtgttttccttgttactattcatttccctccggattat 249
Query: 203 ccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatattaacagt 262
||||||||||| || ||||| || |||| ||| ||||| || ||||| |||||||||||
Sbjct: 250 ccatttaagcctcccaaggtggctttcaagaccaaggtattccaccc-aatattaacagc 308
Query: 263 aatggcagcatttgccttgacattctaaaggagcagtggagcc 305
| || |||||||| |||||||| | |||||||| |||||||
Sbjct: 309 accgggagcatttgtcttgacatattgaaggagcaatggagcc 351
>gi|237680740|gb|GO246952.1|GO246952 JcrME_RL0496 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 765
Score = 192 bits (97), Expect = 3e-49
Identities = 298/365 (81%)
Strand = Plus / Plus
Query: 101 gctgaggacatgtttcactggcaagcaacaataatgggtcctcctgacagtccttacact 160
||||| || ||||| ||||||||||||||||| |||||||| ||||||| |||| ||
Sbjct: 268 gctgatgatatgttccactggcaagcaacaatcatgggtccagctgacagcccttttgct 327
Query: 161 ggaggcgtgtttctagttactattcattttcctcctgattatccatttaagccacctaag 220
|| || |||||||| || | ||||||||||| || ||||||||||| |||||||| |||
Sbjct: 328 ggtggtgtgtttcttgtctcaattcattttccaccagattatccattcaagccaccgaag 387
Query: 221 gttgcattcaggacaaaggtttttcacccaaatattaacagtaatggcagcatttgcctt 280
||| | ||| | |||||||| || || || || || ||||| ||||| |||||||| |||
Sbjct: 388 gtttccttccgtacaaaggtcttccatcccaacatcaacagcaatggaagcatttgtctt 447
Query: 281 gacattctaaaggagcagtggagcccagccctgacaatatctaaggtgttgctctccata 340
|||||||| || |||||||||||||| ||||| || ||||| ||||| | | |||||
Sbjct: 448 gacattctcaaagagcagtggagccctgcccttactatatccaaggtccttttgtccatc 507
Query: 341 tgttccctcttgacggacccaaacccagatgatcccttggtgccagaaattgctcacatg 400
|| || || |||| || ||||||||||||||||| ||||||| || ||||||||||||
Sbjct: 508 tgctcactgctgactgatccaaacccagatgatccgctggtgcctgagattgctcacatg 567
Query: 401 tacaagacagacagggccaagtacgaggcaactgctaggagctggacacagaagtatgcc 460
|||||||| || || |||||||| ||||| |||||| | |||||| ||||| |||||
Sbjct: 568 tacaagacggatagagccaagtatgaggctactgctcgatcctggacccagaaatatgca 627
Query: 461 atggg 465
|||||
Sbjct: 628 atggg 632
>gi|268523263|gb|FM894029.1|FM894029 FM894029 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004993,
mRNA sequence
Length = 430
Score = 172 bits (87), Expect = 3e-43
Identities = 174/203 (85%)
Strand = Plus / Minus
Query: 263 aatggcagcatttgccttgacattctaaaggagcagtggagcccagccctgacaatatct 322
||||| |||||||||||||| ||| | ||||||||||||||||| ||||| || || ||
Sbjct: 425 aatggtagcatttgccttgatattttgaaggagcagtggagccctgcccttaccatttcc 366
Query: 323 aaggtgttgctctccatatgttccctcttgacggacccaaacccagatgatcccttggtg 382
||||||||||| || || ||||| || |||||||||||||| || || ||||| ||||||
Sbjct: 365 aaggtgttgctttcaatttgttctctattgacggacccaaatcctgacgatccgttggtg 306
Query: 383 ccagaaattgctcacatgtacaagacagacagggccaagtacgaggcaactgctaggagc 442
||||||||||| |||||||| ||||| || ||| ||| ||||||||||| || ||||||
Sbjct: 305 ccagaaattgcccacatgtataagactgataggagcaaatacgaggcaacagcaaggagc 246
Query: 443 tggacacagaagtatgccatggg 465
||||| ||||||||||| |||||
Sbjct: 245 tggacccagaagtatgctatggg 223
>gi|237680561|gb|GO246773.1|GO246773 JcrME_RL0317 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 684
Score = 157 bits (79), Expect = 2e-38
Identities = 199/239 (83%)
Strand = Plus / Minus
Query: 227 ttcaggacaaaggtttttcacccaaatattaacagtaatggcagcatttgccttgacatt 286
||||| |||||||| || ||||||||||||||||| || || |||||||| ||||||||
Sbjct: 547 ttcagaacaaaggtattccacccaaatattaacagcaacgggagcatttgtcttgacata 488
Query: 287 ctaaaggagcagtggagcccagccctgacaatatctaaggtgttgctctccatatgttcc 346
| |||||||| |||||||| || || || ||||||||||||||||| || || |||||
Sbjct: 487 ttgaaggagcaatggagccctgctctaaccatatctaaggtgttgctttcaatttgttct 428
Query: 347 ctcttgacggacccaaacccagatgatcccttggtgccagaaattgctcacatgtacaag 406
| |||||||| || || || |||||||| || |||||||| || || ||||||||||||
Sbjct: 427 ttgttgacggatcccaatcctgatgatccgttagtgccagagatagcacacatgtacaag 368
Query: 407 acagacagggccaagtacgaggcaactgctaggagctggacacagaagtatgccatggg 465
||||||||| ||||| ||| |||| ||||| |||||||| || |||||||| |||||
Sbjct: 367 acagacaggaataagtatgagacaaccgctagaagctggactcaaaagtatgcaatggg 309
>gi|268517711|gb|FM893086.1|FM893086 FM893086 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003867,
mRNA sequence
Length = 287
Score = 151 bits (76), Expect = 1e-36
Identities = 188/222 (84%), Gaps = 5/222 (2%)
Strand = Plus / Plus
Query: 47 gagctcaaggatctccagaaggatcctcctacctcttgcagcgctggtccggtagctgag 106
|||||||| ||| | ||||| |||||||||||||||||||| |||||||| || ||||||
Sbjct: 23 gagctcaaagatttgcagaaagatcctcctacctcttgcagtgctggtcccgtggctgag 82
Query: 107 gacatgtttcactggcaagcaacaataatgggtcctcctgacagtccttacactggaggc 166
|||||||| || |||||||||||||| ||||| ||| |||| | |||||| || |||
Sbjct: 83 gacatgttccattggcaagcaacaattatgggacctactgata-tcctta---tgcagga 138
Query: 167 gtgt-ttctagttactattcattttcctcctgattatccatttaagccacctaaggttgc 225
| || |||| || |||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 139 gagtcttcttatttctattcatttccctcctgattatccttttaagcctcctaaggttgc 198
Query: 226 attcaggacaaaggtttttcacccaaatattaacagtaatgg 267
||| |||||||| || || || ||||| ||||| ||||||||
Sbjct: 199 atttaggacaaaagtcttccatccaaacattaatagtaatgg 240
>gi|218687587|gb|GH296180.1|GH296180 JCL629 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 383
Score = 109 bits (55), Expect = 4e-24
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 323 aaggtgttgctctccatatgttccctcttgacggacccaaacccagatgatcccttggtg 382
||||||||||| || || ||||| || |||||||||||||| || || ||||| ||||||
Sbjct: 6 aaggtgttgctttcaatttgttctctattgacggacccaaatcctgacgatccgttggtg 65
Query: 383 ccagaaattgctcacatgtacaagacagacagggccaagtacgaggcaactgctaggagc 442
|||||||| || |||||||| ||||| || ||| ||| ||||||||||| || ||||||
Sbjct: 66 ccagaaatcgcccacatgtataagactgataggagcaaatacgaggcaacagcaaggagc 125
Query: 443 tggacacagaagtatgccatggg 465
||||| ||||||| ||| |||||
Sbjct: 126 tggacccagaagtctgctatggg 148
>gi|218687752|gb|GH295786.1|GH295786 JCL235 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 383
Score = 109 bits (55), Expect = 4e-24
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 323 aaggtgttgctctccatatgttccctcttgacggacccaaacccagatgatcccttggtg 382
||||||||||| || || ||||| || |||||||||||||| || || ||||| ||||||
Sbjct: 6 aaggtgttgctttcaatttgttctctattgacggacccaaatcctgacgatccgttggtg 65
Query: 383 ccagaaattgctcacatgtacaagacagacagggccaagtacgaggcaactgctaggagc 442
|||||||| || |||||||| ||||| || ||| ||| ||||||||||| || ||||||
Sbjct: 66 ccagaaatcgcccacatgtataagactgataggagcaaatacgaggcaacagcaaggagc 125
Query: 443 tggacacagaagtatgccatggg 465
||||| ||||||| ||| |||||
Sbjct: 126 tggacccagaagtctgctatggg 148
>gi|268523312|gb|FM894078.1|FM894078 FM894078 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_005051,
mRNA sequence
Length = 582
Score = 97.6 bits (49), Expect = 1e-20
Identities = 214/269 (79%)
Strand = Plus / Minus
Query: 197 gattatccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatatt 256
|||||||| || ||||| || ||||||||||| ||||| ||||| ||||| ||||| ||
Sbjct: 579 gattatcctttcaagcctccgaaggttgcatttaggaccaaggtgtttcatccaaacata 520
Query: 257 aacagtaatggcagcatttgccttgacattctaaaggagcagtggagcccagccctgaca 316
||||||||||| |||||||| ||||| || || || || || |||||||| || || ||
Sbjct: 519 aacagtaatggaagcatttgtcttgatatcctcaaagaacaatggagccctgctctcacc 460
Query: 317 atatctaaggtgttgctctccatatgttccctcttgacggacccaaacccagatgatccc 376
|| |||||||| ||||| || || || || | |||| || ||||| || ||||| ||
Sbjct: 459 atttctaaggtattgctatctatttgctcattgctgactgatccaaatcccgatgaccca 400
Query: 377 ttggtgccagaaattgctcacatgtacaagacagacagggccaagtacgaggcaactgct 436
| || ||||| ||||| || ||||| ||||| || | || ||||| || ||||||||
Sbjct: 399 cttgtcccagagattgcccatatgtataagactgatcgagcaaagtatgaagcaactgca 340
Query: 437 aggagctggacacagaagtatgccatggg 465
| ||||||||||||||||||||||||||
Sbjct: 339 cgcagctggacacagaagtatgccatggg 311
>gi|268526358|gb|FM891614.1|FM891614 FM891614 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001939,
mRNA sequence
Length = 375
Score = 93.7 bits (47), Expect = 2e-19
Identities = 117/139 (84%), Gaps = 1/139 (0%)
Strand = Plus / Minus
Query: 328 gttgctctccatatgttccctcttgacggacccaaacccagatgatcccttggtgccaga 387
|||||| || || ||||| || ||| |||||||||| || || ||||| |||||||||||
Sbjct: 375 gttgctttcaatttgttctctattgtcggacccaaatcctgacgatccgttggtgccaga 316
Query: 388 aattgctcacatgtacaagacagacagggccaagta-cgaggcaactgctaggagctgga 446
|||||| |||||||| ||||| || ||| ||| || ||||||||| || ||||||||||
Sbjct: 315 aattgcccacatgtataagactgataggagcaaatagcgaggcaacagcaaggagctgga 256
Query: 447 cacagaagtatgccatggg 465
| ||||||||||| |||||
Sbjct: 255 cccagaagtatgctatggg 237
>gi|268523389|gb|FM893712.1|FM893712 FM893712 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004617,
mRNA sequence
Length = 420
Score = 61.9 bits (31), Expect = 7e-10
Identities = 172/219 (78%)
Strand = Plus / Plus
Query: 247 cccaaatattaacagtaatggcagcatttgccttgacattctaaaggagcagtggagccc 306
|||||| || ||||||||||| |||||||| ||||| || || || || || ||||||||
Sbjct: 4 cccaaacataaacagtaatggaagcatttgtcttgatatcctcaaagaacaatggagccc 63
Query: 307 agccctgacaatatctaaggtgttgctctccatatgttccctcttgacggacccaaaccc 366
|| || || || |||||||| ||||| || || || || | |||| || ||||| ||
Sbjct: 64 tgctctcaccatttctaaggtattgctatctatttgctcattgctgactgatccaaatcc 123
Query: 367 agatgatcccttggtgccagaaattgctcacatgtacaagacagacagggccaagtacga 426
||||| || | || ||||| ||||| || ||||| ||||| || | || ||||| ||
Sbjct: 124 cgatgacccacttgtcccagagattgcccatatgtataagactgatcgagcaaagtatga 183
Query: 427 ggcaactgctaggagctggacacagaagtatgccatggg 465
|||||||| | ||||||||||||||||||||||||||
Sbjct: 184 agcaactgcacgcagctggacacagaagtatgccatggg 222
>gi|268517147|gb|FM893495.1|FM893495 FM893495 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004333,
mRNA sequence
Length = 237
Score = 54.0 bits (27), Expect = 2e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 101 gctgaggacatgtttcactggcaagcaacaataatgggtcctcctgacagtcctt 155
||||| || ||||| ||||||||||||||||| |||||||| ||||||| ||||
Sbjct: 169 gctgatgatatgttccactggcaagcaacaatcatgggtcccgctgacagccctt 223
>gi|268523892|gb|FM890578.1|FM890578 FM890578 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000466,
mRNA sequence
Length = 444
Score = 54.0 bits (27), Expect = 2e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 419 aagtacgaggcaactgctaggagctggacacagaagtatgccatggg 465
||||| || |||||||| | ||||||||||||||||||||||||||
Sbjct: 315 aagtatgaagcaactgcacgcagctggacacagaagtatgccatggg 269