Jatropha Genome Database
- JcCA0310551.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0310551.10 + phase: 2 /pseudo/partial
(427 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|218686946|gb|GH295914.1|GH295914 JCL363 Jatropha curcas total... 743 0.0
gi|218687175|gb|GH296494.1|GH296494 JCL944 Jatropha curcas total... 743 0.0
gi|218687766|gb|GH296307.1|GH296307 JCL757 Jatropha curcas total... 743 0.0
gi|268523939|gb|FM890625.1|FM890625 FM890625 Jatropha curcas emb... 174 5e-44
gi|268519194|gb|FM887661.1|FM887661 FM887661 Jatropha curcas emb... 72 6e-13
gi|268519355|gb|FM887822.1|FM887822 FM887822 Jatropha curcas emb... 62 5e-10
>gi|218686946|gb|GH295914.1|GH295914 JCL363 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 783
Score = 743 bits (375), Expect = 0.0
Identities = 419/438 (95%), Gaps = 11/438 (2%)
Strand = Plus / Plus
Query: 1 atctgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcgtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 39 atctgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcttggt 98
Query: 61 gctgattgttgtgttcttgtatatgatgttaattcaatgaaatcatttgacaatctcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 gctgattgttgtgttcttgtatatgatgttaattcaatgaaatcatttgacaatctcaat 158
Query: 121 aattggagagaagaattcctcatacaggcaagcccttctgatccagagaatttcccattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aattggagagaagaattcctcatacaggcaagcccttctgatccagagaatttcccattt 218
Query: 181 gttgttcttggaaacaagattgatgtggatggtggaaatagtagagtggtttcagnnnnn 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gttgttcttggaaacaagattgatgtggatggtggaaatagtagagtggtttcagaaaaa 278
Query: 241 nnggcaagagcgtggtgtgcctctaaagggaatataccatactttgagacttcagccaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaggcaagagcgtggtgtgcctctaaagggaatataccatactttgagacttcagccaaa 338
Query: 301 gaaggcatcaacgttgaagaagctttccaatgcattgcaaagaatgccctgaagagtggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaaggcatcaacgttgaagaagctttccaatgcattgcaaagaatgccctgaagagtggg 398
Query: 361 gaagaggaggagat-----------ataccattgatgttggtaacagcagtcagcctagg 409
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 399 gaagaggaggagatatacttgccagataccattgatgttggtaacagcagtcagcctagg 458
Query: 410 tcaactggatgtgagtgc 427
||||||||||||||||||
Sbjct: 459 tcaactggatgtgagtgc 476
>gi|218687175|gb|GH296494.1|GH296494 JCL944 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 783
Score = 743 bits (375), Expect = 0.0
Identities = 419/438 (95%), Gaps = 11/438 (2%)
Strand = Plus / Plus
Query: 1 atctgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcgtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 39 atctgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcttggt 98
Query: 61 gctgattgttgtgttcttgtatatgatgttaattcaatgaaatcatttgacaatctcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 gctgattgttgtgttcttgtatatgatgttaattcaatgaaatcatttgacaatctcaat 158
Query: 121 aattggagagaagaattcctcatacaggcaagcccttctgatccagagaatttcccattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aattggagagaagaattcctcatacaggcaagcccttctgatccagagaatttcccattt 218
Query: 181 gttgttcttggaaacaagattgatgtggatggtggaaatagtagagtggtttcagnnnnn 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gttgttcttggaaacaagattgatgtggatggtggaaatagtagagtggtttcagaaaaa 278
Query: 241 nnggcaagagcgtggtgtgcctctaaagggaatataccatactttgagacttcagccaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaggcaagagcgtggtgtgcctctaaagggaatataccatactttgagacttcagccaaa 338
Query: 301 gaaggcatcaacgttgaagaagctttccaatgcattgcaaagaatgccctgaagagtggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaaggcatcaacgttgaagaagctttccaatgcattgcaaagaatgccctgaagagtggg 398
Query: 361 gaagaggaggagat-----------ataccattgatgttggtaacagcagtcagcctagg 409
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 399 gaagaggaggagatatacttgccagataccattgatgttggtaacagcagtcagcctagg 458
Query: 410 tcaactggatgtgagtgc 427
||||||||||||||||||
Sbjct: 459 tcaactggatgtgagtgc 476
>gi|218687766|gb|GH296307.1|GH296307 JCL757 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 783
Score = 743 bits (375), Expect = 0.0
Identities = 419/438 (95%), Gaps = 11/438 (2%)
Strand = Plus / Plus
Query: 1 atctgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcgtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 39 atctgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcttggt 98
Query: 61 gctgattgttgtgttcttgtatatgatgttaattcaatgaaatcatttgacaatctcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 gctgattgttgtgttcttgtatatgatgttaattcaatgaaatcatttgacaatctcaat 158
Query: 121 aattggagagaagaattcctcatacaggcaagcccttctgatccagagaatttcccattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aattggagagaagaattcctcatacaggcaagcccttctgatccagagaatttcccattt 218
Query: 181 gttgttcttggaaacaagattgatgtggatggtggaaatagtagagtggtttcagnnnnn 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gttgttcttggaaacaagattgatgtggatggtggaaatagtagagtggtttcagaaaaa 278
Query: 241 nnggcaagagcgtggtgtgcctctaaagggaatataccatactttgagacttcagccaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaggcaagagcgtggtgtgcctctaaagggaatataccatactttgagacttcagccaaa 338
Query: 301 gaaggcatcaacgttgaagaagctttccaatgcattgcaaagaatgccctgaagagtggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaaggcatcaacgttgaagaagctttccaatgcattgcaaagaatgccctgaagagtggg 398
Query: 361 gaagaggaggagat-----------ataccattgatgttggtaacagcagtcagcctagg 409
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 399 gaagaggaggagatatacttgccagataccattgatgttggtaacagcagtcagcctagg 458
Query: 410 tcaactggatgtgagtgc 427
||||||||||||||||||
Sbjct: 459 tcaactggatgtgagtgc 476
>gi|268523939|gb|FM890625.1|FM890625 FM890625 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000527,
mRNA sequence
Length = 453
Score = 174 bits (88), Expect = 5e-44
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 atctgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcgtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atctgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcgtggt 425
Query: 61 gctgattgttgtgttcttgtatatgatg 88
||||||||||||||||||||||||||||
Sbjct: 426 gctgattgttgtgttcttgtatatgatg 453
>gi|268519194|gb|FM887661.1|FM887661 FM887661 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000904,
mRNA sequence
Length = 286
Score = 71.9 bits (36), Expect = 6e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 388 tggtaacagcagtcagcctaggtcaactggatgtgagtgc 427
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tggtaacagcagtcagcctaagtcaactggatgtgagtgc 40
>gi|268519355|gb|FM887822.1|FM887822 FM887822 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001094,
mRNA sequence
Length = 564
Score = 61.9 bits (31), Expect = 5e-10
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 19 caggaaagattccaaagtcttggcgttgctttctatcgtggtgctgattgttgtgttctt 78
||||||||||| |||||||| || || || || || |||||||| || ||||||||||||
Sbjct: 463 caggaaagatttcaaagtctaggagtggcattttaccgtggtgcagactgttgtgttctt 522
Query: 79 gtatatgatgt 89
|| ||||||||
Sbjct: 523 gtctatgatgt 533