Jatropha Genome Database

JcCA0309581.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0309581.10 + phase: 0 
         (1344 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520936|gb|FM891655.1|FM891655 FM891655 Jatropha curcas emb...   198   1e-50

>gi|268520936|gb|FM891655.1|FM891655 FM891655 Jatropha curcas embryo
            56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002006,
            mRNA sequence
          Length = 575

 Score =  198 bits (100), Expect = 1e-50
 Identities = 416/520 (80%), Gaps = 1/520 (0%)
 Strand = Plus / Plus

                                                                        
Query: 491  tatttcgatactatgctggttgggcagataagatccacggtcttacagttccagctgatg 550
            ||||||| ||||||||||||||||| |||||||| || || || |||||||| | |||  
Sbjct: 8    tatttcgttactatgctggttgggcggataagattcatgggctaacagttcctg-tgaca 66

                                                                        
Query: 551  ggcagcatcatgtgcaaacattgcacgaaccgattggtgttgcaggtcagattattccat 610
            |  | || ||| | |||  |||||| ||||| ||||| |||||||| || ||||||||||
Sbjct: 67   gtaatcaccatattcaagtattgcatgaacctattggagttgcagggcaaattattccat 126

                                                                        
Query: 611  ggaatttccctcttctgatgtatgcttggaaagttggaccggcattggcatgtggcaata 670
            ||||||| |||||| |  ||| ||||||||||||||| || ||||| || ||||| ||||
Sbjct: 127  ggaattttcctcttatcttgtttgcttggaaagttggtcctgcattagcttgtggtaata 186

                                                                        
Query: 671  cggttgttattaagacagcagagcagacaccattgtccgctttttatgtatctaagctat 730
            |  ||||  | || ||| |||| ||||||||  |  | ||| | |||| |   ||||| |
Sbjct: 187  ctattgtactgaaaacatcagaacagacacctcttactgctctctatgcaggaaagctct 246

                                                                        
Query: 731  ttcatgaggctggacttccagaaggtgttttgaatgtggtttctggttttggcccaactg 790
            | ||||| ||||| |||||   ||||||| ||||||| ||||| || | ||| |||||||
Sbjct: 247  tccatgatgctggccttcctccaggtgttctgaatgtagtttcaggctatggtccaactg 306

                                                                        
Query: 791  ctggtgctgctcttgcgagccatatgaatgtggataagcttgctttcaccggatcaacag 850
            ||||| | |||||||| || || ||| |||| || ||| || ||||||| |||||||| |
Sbjct: 307  ctggttcagctcttgccagtcacatggatgtagacaagatttctttcacaggatcaactg 366

                                                                        
Query: 851  atacaggaaaagttgttcttgagttagcagcaagaagcaatcttaagccagtaactttgg 910
            | ||||| || ||| | || || || || || | ||| |||||||||||||| || || |
Sbjct: 367  agacaggcaaggttatcctcgaattggctgctaaaagtaatcttaagccagttacattag 426

                                                                        
Query: 911  aacttggagggaaatcgccttttattgtttgcgaggatgctgatgttgaccaggctgttg 970
            |||||||||||||||| ||||| || || ||||| ||||||||| ||||| ||||||| |
Sbjct: 427  aacttggagggaaatcacctttcatagtatgcgaagatgctgatattgacaaggctgtgg 486

                                                    
Query: 971  agcttgctcactttgctttattctttaatcagggtcaatg 1010
            ||||||| |||||||| | ||||||||||||||| |||||
Sbjct: 487  agcttgcacactttgcctgattctttaatcagggccaatg 526