Jatropha Genome Database
- JcCA0309351.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0309351.30 + phase: 0 /partial/short
(129 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268522184|gb|FM893024.1|FM893024 FM893024 Jatropha curcas emb... 192 6e-50
gi|268521024|gb|FM891743.1|FM891743 FM891743 Jatropha curcas emb... 188 1e-48
gi|268519975|gb|FM889823.1|FM889823 FM889823 Jatropha curcas emb... 186 4e-48
gi|268517715|gb|FM893090.1|FM893090 FM893090 Jatropha curcas emb... 184 2e-47
gi|268519957|gb|FM889805.1|FM889805 FM889805 Jatropha curcas emb... 176 4e-45
gi|262091140|gb|GT228567.1|GT228567 JC132 Jatropha seeds from fr... 163 6e-41
gi|262090928|gb|GT229286.1|GT229286 JC851 Jatropha seeds from fr... 159 9e-40
>gi|268522184|gb|FM893024.1|FM893024 FM893024 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003745,
mRNA sequence
Length = 241
Score = 192 bits (97), Expect = 6e-50
Identities = 109/113 (96%)
Strand = Plus / Plus
Query: 17 ggatcaatggatccctagcacgccgagcaatcaaggatttgatggcaagaggttctatca 76
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 16 ggatcaatggatctctagcacgccgggcaatcaaggatttgatggcaagaggttctatca 75
Query: 77 ggatgatatctgctcatgctagtcagcaaatttacaccagagccacaaatacc 129
|||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 76 ggatgatatctgctcatgctagtcagcagatttacaccagagctacaaatacc 128
>gi|268521024|gb|FM891743.1|FM891743 FM891743 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002115,
mRNA sequence
Length = 383
Score = 188 bits (95), Expect = 1e-48
Identities = 107/111 (96%)
Strand = Plus / Minus
Query: 17 ggatcaatggatccctagcacgccgagcaatcaaggatttgatggcaagaggttctatca 76
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 ggatcaatggatctctagcacgccgggcaatcaaggatttgatggcaagaggttctatca 206
Query: 77 ggatgatatctgctcatgctagtcagcaaatttacaccagagccacaaata 127
|||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 205 ggatgatatctgctcatgctagtcagcagatttacaccagagctacaaata 155
>gi|268519975|gb|FM889823.1|FM889823 FM889823 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003560,
mRNA sequence
Length = 367
Score = 186 bits (94), Expect = 4e-48
Identities = 106/110 (96%)
Strand = Plus / Plus
Query: 20 tcaatggatccctagcacgccgagcaatcaaggatttgatggcaagaggttctatcagga 79
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 16 tcaatggatctctagcacgccgggcaatcaaggatttgatggcaagaggttctatcagga 75
Query: 80 tgatatctgctcatgctagtcagcaaatttacaccagagccacaaatacc 129
||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 76 tgatatctgctcatgctagtcagcagatttacaccagagctacaaatacc 125
>gi|268517715|gb|FM893090.1|FM893090 FM893090 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_003802,
mRNA sequence
Length = 486
Score = 184 bits (93), Expect = 2e-47
Identities = 108/113 (95%)
Strand = Plus / Plus
Query: 17 ggatcaatggatccctagcacgccgagcaatcaaggatttgatggcaagaggttctatca 76
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 226 ggatcaatggatctctagcacgccgggcaatcaaggatttgatggcaagaggttcgatca 285
Query: 77 ggatgatatctgctcatgctagtcagcaaatttacaccagagccacaaatacc 129
|||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 286 ggatgatatctgctcatgctagtcagcagatttacaccagagctacaaatacc 338
>gi|268519957|gb|FM889805.1|FM889805 FM889805 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003542,
mRNA sequence
Length = 505
Score = 176 bits (89), Expect = 4e-45
Identities = 107/113 (94%)
Strand = Plus / Plus
Query: 17 ggatcaatggatccctagcacgccgagcaatcaaggatttgatggcaagaggttctatca 76
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 262 ggatcaatggatctctagcacgccgggcaatcaaagatttgatggcaagaggttcgatca 321
Query: 77 ggatgatatctgctcatgctagtcagcaaatttacaccagagccacaaatacc 129
|||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 322 ggatgatatctgctcatgctagtcagcagatttacaccagagctacaaatacc 374
>gi|262091140|gb|GT228567.1|GT228567 JC132 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone Contig134 5', mRNA sequence
Length = 359
Score = 163 bits (82), Expect = 6e-41
Identities = 91/94 (96%)
Strand = Plus / Minus
Query: 36 acgccgagcaatcaaggatttgatggcaagaggttctatcaggatgatatctgctcatgc 95
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acgccgggcaatcaaggatttgatggcaagaggttctatcaggatgatatctgctcatgc 239
Query: 96 tagtcagcaaatttacaccagagccacaaatacc 129
||||||||| |||||||||||||| |||||||||
Sbjct: 238 tagtcagcagatttacaccagagctacaaatacc 205
>gi|262090928|gb|GT229286.1|GT229286 JC851 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL21SE.E02.scf 5', mRNA sequence
Length = 374
Score = 159 bits (80), Expect = 9e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 38 gccgagcaatcaaggatttgatggcaagaggttctatcaggatgatatctgctcatgcta 97
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 gccgggcaatcaaggatttgatggcaagaggttctatcaggatgatatctgctcatgcta 101
Query: 98 gtcagcaaatttacaccagagccacaaatacc 129
||||||| |||||||||||||| |||||||||
Sbjct: 102 gtcagcagatttacaccagagctacaaatacc 133