Jatropha Genome Database

JcCA0308861.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0308861.10 + phase: 0 /partial
         (621 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520320|gb|FM890168.1|FM890168 FM890168 Jatropha curcas emb...   644   0.0  
gi|268521770|gb|FM894366.1|FM894366 FM894366 Jatropha curcas emb...   315   3e-86

>gi|268520320|gb|FM890168.1|FM890168 FM890168 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003973,
           mRNA sequence
          Length = 494

 Score =  644 bits (325), Expect = 0.0
 Identities = 332/333 (99%), Gaps = 1/333 (0%)
 Strand = Plus / Minus

                                                                       
Query: 290 ctcgagcaaatgcaactcataatcatgggttggatccagatcgtcttcttgtt-gctgag 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 477 ctcgagcaaatgcaactcataatcatgggttggatccagatcgtcttcttgtttgctgag 418

                                                                       
Query: 349 gcctttgttggaaagggattttttaagaagaggacttcttaccatgcaaaggggagagct 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gcctttgttggaaagggattttttaagaagaggacttcttaccatgcaaaggggagagct 358

                                                                       
Query: 409 ggaattaaagtgagaccagagtgtcgactgactgtagtagtgagagagacaacccctgaa 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggaattaaagtgagaccagagtgtcgactgactgtagtagtgagagagacaacccctgaa 298

                                                                       
Query: 469 gaggaggctaagattgccaggctaagagtgcacaatttccgcaagctcagtaagcgggaa 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gaggaggctaagattgccaggctaagagtgcacaatttccgcaagctcagtaagcgggaa 238

                                                                       
Query: 529 aggcagcttgtgccacacaagcttattgagaccactccaatttggaaccgcaaaggcaaa 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aggcagcttgtgccacacaagcttattgagaccactccaatttggaaccgcaaaggcaaa 178

                                            
Query: 589 gctgctggtcgtgaaccaagtgctgtggctgcc 621
           |||||||||||||||||||||||||||||||||
Sbjct: 177 gctgctggtcgtgaaccaagtgctgtggctgcc 145


>gi|268521770|gb|FM894366.1|FM894366 FM894366 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004706,
           mRNA sequence
          Length = 419

 Score =  315 bits (159), Expect = 3e-86
 Identities = 166/167 (99%), Gaps = 1/167 (0%)
 Strand = Plus / Plus

                                                                       
Query: 456 gacaacccctgaagaggaggctaagattgccaggctaagagtgcacaatttccgcaagct 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gacaacccctgaagaggaggctaagattgccaggctaagagtgcacaatttccgcaagct 60

                                                                       
Query: 516 cagtaagcgggaaaggcagcttgtgccacaca-agcttattgagaccactccaatttgga 574
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61  cagtaagcgggaaaggcagcttgtgccacacacagcttattgagaccactccaatttgga 120

                                                          
Query: 575 accgcaaaggcaaagctgctggtcgtgaaccaagtgctgtggctgcc 621
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accgcaaaggcaaagctgctggtcgtgaaccaagtgctgtggctgcc 167