Jatropha Genome Database
- JcCA0308491.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0308491.20 - phase: 2 /pseudo/partial
(1223 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268520936|gb|FM891655.1|FM891655 FM891655 Jatropha curcas emb... 1065 0.0
gi|268518744|gb|FM888987.1|FM888987 FM888987 Jatropha curcas emb... 137 3e-32
>gi|268520936|gb|FM891655.1|FM891655 FM891655 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002006,
mRNA sequence
Length = 575
Score = 1065 bits (537), Expect = 0.0
Identities = 566/573 (98%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 302 cgtttatttcgttactatgctggttgggcggataagattcatgggctaacagttcctgga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cgtttatttcgttactatgctggttgggcggataagattcatgggctaacagttcctgt- 62
Query: 362 gacagtaatcaccatattcaagtattgcatgaacctattggagttgcagggcaaattatt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gacagtaatcaccatattcaagtattgcatgaacctattggagttgcagggcaaattatt 122
Query: 422 ccatggaattttcctcttatcttgtttgcttggaaagttggtcctgcattagcttgtggt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ccatggaattttcctcttatcttgtttgcttggaaagttggtcctgcattagcttgtggt 182
Query: 482 aatactattgtactgaaaacagcagaacagacacctcttactgctctctatgcaggaaag 541
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 183 aatactattgtactgaaaacatcagaacagacacctcttactgctctctatgcaggaaag 242
Query: 542 ctcttccatgatgctggccttcctccaggtgttctgaatgtagtttcaggctatggtcca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctcttccatgatgctggccttcctccaggtgttctgaatgtagtttcaggctatggtcca 302
Query: 602 actgctggttcagctcttgccagtcacatggatgtagacaagatttctttcacaggatca 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 actgctggttcagctcttgccagtcacatggatgtagacaagatttctttcacaggatca 362
Query: 662 actgagacaggcaaggttatcctcgaattggctgctaaaagtaatcttaagccagttaca 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 actgagacaggcaaggttatcctcgaattggctgctaaaagtaatcttaagccagttaca 422
Query: 722 ttagaacttggagggaaatcacctttcatagtatgcgaagatgctgatattgacaaggct 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttagaacttggagggaaatcacctttcatagtatgcgaagatgctgatattgacaaggct 482
Query: 782 gtggagcttgcacactttgccttgttctttaatcagggccaatgttgttgtgctgggtct 841
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 483 gtggagcttgcacactttgcctgattctttaatcagggccaatgttgtagtgctgggtct 542
Query: 842 cgtacgtatgtacacgagcgcg-tgtatgatga 873
|||||||||||||||||||||| ||||||||||
Sbjct: 543 cgtacgtatgtacacgagcgcgttgtatgatga 575
>gi|268518744|gb|FM888987.1|FM888987 FM888987 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002530,
mRNA sequence
Length = 252
Score = 137 bits (69), Expect = 3e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1155 atctacagccttaataactacttgcaagttaaagctgttgttactcctttaaagaatccg 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 atctacagccttaataactacttgcaagttaaagctgttgttactcctttaaagaatccg 71
Query: 1215 gcttggttg 1223
|||||||||
Sbjct: 72 gcttggttg 80