Jatropha Genome Database

JcCA0308421.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0308421.10 - phase: 0 /pseudo/partial
         (708 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525419|gb|FM896061.1|FM896061 FM896061 Jatropha curcas emb...    74   2e-13

>gi|268525419|gb|FM896061.1|FM896061 FM896061 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003193,
           mRNA sequence
          Length = 657

 Score = 73.8 bits (37), Expect = 2e-13
 Identities = 202/257 (78%)
 Strand = Plus / Plus

                                                                       
Query: 45  gcaaatttgccatagagatcttaagctggaaaatacccttttggatggaagctcagcgcc 104
           ||||||||||||||||||| | ||||| ||||||||| |  ||||||| ||| |||| ||
Sbjct: 73  gcaaatttgccatagagatttgaagctagaaaataccttgctggatggcagcccagcacc 132

                                                                       
Query: 105 gcaactcaagatatgtgactttggctattccaagtcttctgtattgcattctcaacctaa 164
            |  || || || ||||| ||||| ||||| ||||| ||  |  |||||||   ||| ||
Sbjct: 133 acgtctgaaaatctgtgattttggttattctaagtcatccttgctgcattcaagacccaa 192

                                                                       
Query: 165 gtctacagtgggaacaccagcctatattgcaccagaagtcttgtcaaggaaagaatatga 224
            || ||||| || || || || |||||||| ||||| ||  | || |||| |||||||||
Sbjct: 193 atccacagttggcactccggcttatattgccccagaggttctttctaggagagaatatga 252

                                                                       
Query: 225 tgggaagatagcagatgtttggtcttgtggggttaccttgtatgtgatgctagttggcgc 284
           ||| ||||| |||||||| ||||| ||||| || ||  ||||||| ||||| || || ||
Sbjct: 253 tggcaagatggcagatgtatggtcctgtggagtgactctgtatgttatgctggtaggagc 312

                            
Query: 285 ttatccatttgaagatc 301
            || |||||||||||||
Sbjct: 313 atacccatttgaagatc 329