Jatropha Genome Database

JcCA0308311.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0308311.10 - phase: 0 
         (1641 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518859|gb|FM889102.1|FM889102 FM889102 Jatropha curcas emb...   268   2e-71
gi|268520606|gb|FM889364.1|FM889364 FM889364 Jatropha curcas emb...   125   2e-28

>gi|268518859|gb|FM889102.1|FM889102 FM889102 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002675,
            mRNA sequence
          Length = 484

 Score =  268 bits (135), Expect = 2e-71
 Identities = 141/143 (98%)
 Strand = Plus / Plus

                                                                        
Query: 958  agctgggatattagcatgaaagaccaacttccagattacatgaaggtgtattttcaagca 1017
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 190  agctgggatattagcatgaaagatcaacttccagattacatgaaggtgtattttcaagca 249

                                                                        
Query: 1018 ttattagatttttattctgaaatagaggaagaaacaaccaaggaaggaaggtctttctgt 1077
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250  ttattagatttttattctgaaatagaggaagaaacaaccaaggaaggaaggtctttctgt 309

                                   
Query: 1078 attcattatgcgaaagaagcggt 1100
             ||||||||||||||||||||||
Sbjct: 310  gttcattatgcgaaagaagcggt 332



 Score =  117 bits (59), Expect = 4e-26
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                       
Query: 877 gctatggtgtgtgtaatggatgatatctatgaagtgcatggcacaattgaggaacttgag 936
           |||||| ||| ||||||||||||||| ||||| |||||||||||| |||| |||||||||
Sbjct: 7   gctatgctgtctgtaatggatgatatttatgatgtgcatggcacatttgaagaacttgag 66

                                  
Query: 937 cttttcaccaaagtgattgaaag 959
           |||||||||||||||||||||||
Sbjct: 67  cttttcaccaaagtgattgaaag 89


>gi|268520606|gb|FM889364.1|FM889364 FM889364 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003012,
            mRNA sequence
          Length = 494

 Score =  125 bits (63), Expect = 2e-28
 Identities = 69/71 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1346 agtttgagcaagaaagaggacatgttgcttccgcagtagaatgttgtatgaagcaatatg 1405
            |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 71   agtttgagcaagaaaggggacatgttgcttctgcagtagaatgttgtatgaagcaatatg 12

                       
Query: 1406 gtgtgtcaaag 1416
            |||||||||||
Sbjct: 11   gtgtgtcaaag 1