Jatropha Genome Database

JcCA0308171.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0308171.30 - phase: 0 /pseudo/partial
         (585 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524309|gb|FM894989.1|FM894989 FM894989 Jatropha curcas emb...   339   2e-93
gi|268519193|gb|FM887660.1|FM887660 FM887660 Jatropha curcas emb...    58   1e-08

>gi|268524309|gb|FM894989.1|FM894989 FM894989 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001312,
           mRNA sequence
          Length = 514

 Score =  339 bits (171), Expect = 2e-93
 Identities = 171/171 (100%)
 Strand = Plus / Minus

                                                                       
Query: 415 gcatcaagggctgccaggaatttggggaagaaccaagtaatgcaaattagtgtagcacgc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gcatcaagggctgccaggaatttggggaagaaccaagtaatgcaaattagtgtagcacgc 455

                                                                       
Query: 475 accatttctgtcaaggatgtaattgccgtgctagaaagagaaccccagatgtccaagtct 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 accatttctgtcaaggatgtaattgccgtgctagaaagagaaccccagatgtccaagtct 395

                                                              
Query: 535 aatctgatttgtcgattgcacgagaggacagggtctggtgctcaaactaaa 585
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aatctgatttgtcgattgcacgagaggacagggtctggtgctcaaactaaa 344


>gi|268519193|gb|FM887660.1|FM887660 FM887660 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000903,
           mRNA sequence
          Length = 472

 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 112/140 (80%), Gaps = 6/140 (4%)
 Strand = Plus / Plus

                                                                       
Query: 394 gaaaagaggagctctgcagctgcatcaagggctgccaggaatttggggaagaaccaagta 453
           |||||||| ||| ||||||||||||||||| |||  ||||| || |||| |||||||| |
Sbjct: 1   gaaaagagaagccctgcagctgcatcaaggcctgttaggaaatttgggaggaaccaagga 60

                                                                       
Query: 454 at------gcaaattagtgtagcacgcaccatttctgtcaaggatgtaattgccgtgcta 507
           ||       |||| ||| || || ||||  ||||| || |||||||| ||||| | ||| 
Sbjct: 61  atcgtaccacaaaatagggtggctcgcagtatttcggtgaaggatgtgattgcagcgctg 120

                               
Query: 508 gaaagagaaccccagatgtc 527
           ||||||||||||||||||||
Sbjct: 121 gaaagagaaccccagatgtc 140