Jatropha Genome Database

JcCA0307631.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0307631.10 + phase: 0 
         (1482 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517582|gb|FM889293.1|FM889293 FM889293 Jatropha curcas emb...    64   5e-10
gi|268522952|gb|FM896395.1|FM896395 FM896395 Jatropha curcas emb...    54   5e-07

>gi|268517582|gb|FM889293.1|FM889293 FM889293 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002919,
            mRNA sequence
          Length = 437

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 1083 agcaattggaggatttgtgacgcattgtggatggaattca 1122
            |||| |||||||||||||||| ||||||||||||||||||
Sbjct: 40   agcagttggaggatttgtgactcattgtggatggaattca 1


>gi|268522952|gb|FM896395.1|FM896395 FM896395 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003611,
           mRNA sequence
          Length = 495

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                       
Query: 687 tgttaaagaatacaagaatgcaagagggaatactaggatttggtgtattggccctgtttc 746
           |||| |||||| |||||| |||||||| |||| || | ||||||||||||| || |||||
Sbjct: 296 tgttcaagaattcaagaaagcaagaggaaataataaggtttggtgtattggtccagtttc 355

              
Query: 747 act 749
           |||
Sbjct: 356 act 358