Jatropha Genome Database
- JcCA0307051.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0307051.30 - phase: 0
(732 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268524233|gb|FM894912.1|FM894912 FM894912 Jatropha curcas emb... 1049 0.0
gi|237680669|gb|GO246820.1|GO246820 JcrME_RL0364 Expressed seque... 652 0.0
gi|262091114|gb|GT228541.1|GT228541 JC106 Jatropha seeds from fr... 186 2e-47
gi|218687349|gb|GH296003.1|GH296003 JCL452 Jatropha curcas total... 127 2e-29
gi|218687562|gb|GH295609.1|GH295609 JCL58 Jatropha curcas total ... 127 2e-29
gi|268519495|gb|FM887962.1|FM887962 FM887962 Jatropha curcas emb... 127 2e-29
gi|268521693|gb|FM894289.1|FM894289 FM894289 Jatropha curcas emb... 125 8e-29
gi|268525970|gb|FM891226.1|FM891226 FM891226 Jatropha curcas emb... 109 4e-24
gi|268525249|gb|FM895891.1|FM895891 FM895891 Jatropha curcas emb... 105 7e-23
gi|268526374|gb|FM891630.1|FM891630 FM891630 Jatropha curcas emb... 90 4e-18
gi|268523685|gb|FM892218.1|FM892218 FM892218 Jatropha curcas emb... 78 2e-14
>gi|268524233|gb|FM894912.1|FM894912 FM894912 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000821,
mRNA sequence
Length = 635
Score = 1049 bits (529), Expect = 0.0
Identities = 531/532 (99%)
Strand = Plus / Plus
Query: 201 aaggattcgtgttagaggaggcaatgttaagtggagagccctgagattggacacaggaaa 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggattcgtgttagaggaggcaatgttaagtggagagccctgagattggacacaggaaa 60
Query: 261 ttattcctggggtagtgaggctgttacccgcaagactcgtatccttgatgtggtttataa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttattcctggggtagtgaggctgttacccgcaagactcgtatccttgatgtggtttataa 120
Query: 321 tgcctccaacaacgaacttgttaggacccaaactttggtgaagagtgctattgttcaggt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcctccaacaacgaacttgttaggacccaaactttggtgaagagtgctattgttcaggt 180
Query: 381 tgatgctgctccatttaagcaatggtatctccagcactatggtgttgacataggcaggaa 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgatgctgctccatttaagcaatggtatctccagcactatggtgttgacataggcaggaa 240
Query: 441 gaagaagactgttgctaagaaggaaactactgaggaaggggatgctgctgctcctgccac 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaagaagactgttgctaagaaggaaactactgaggaaggggatgctgctgctcctgccac 300
Query: 501 ggcagaggaagctaagaagagcaaccatgtacagaggaagcttgagaaacgccagaagga 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggcagaggaagctaagaagagcaaccatgtacagaggaagcttgagaaacgccagaagga 360
Query: 561 tcgtaagcttgaccctcacattgaagagcaatttggagctggaagattgttggcctgcat 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcgtaagcttgaccctcacattgaagagcaatttggagctggaagattgttggcctgcat 420
Query: 621 ctcatctcgacctggtcaatgtggcagagctgatgggtacatattggagggtaaggaact 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctcatctcgacctggtcaatgtggcagagctgatgggtacatattggagggtaaggaact 480
Query: 681 tgagttctatatgaagaagatccaaaagaagaagggcaagggtgctgcctaa 732
||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 481 tgagttctatatgaagaagatccaaaagaagaagggcaanggtgctgcctaa 532
>gi|237680669|gb|GO246820.1|GO246820 JcrME_RL0364 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 671
Score = 652 bits (329), Expect = 0.0
Identities = 357/361 (98%), Gaps = 4/361 (1%)
Strand = Plus / Minus
Query: 372 tgttcaggttgatgctgctccatttaagcaatggtatctccagcactatggtgttgacat 431
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 552 tgttcaggt-gatgctgctccatttaagcaatg-tatctccagcactatggtgttgacat 495
Query: 432 aggcaggaagaagaagactgttgctaagaaggaaactactgaggaaggggatgctgctgc 491
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ag-cag-aagaagaagactgttgctaagaaggaaactactgaggaaggggatgctgctgc 437
Query: 492 tcctgccacggcagaggaagctaagaagagcaaccatgtacagaggaagcttgagaaacg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tcctgccacggcagaggaagctaagaagagcaaccatgtacagaggaagcttgagaaacg 377
Query: 552 ccagaaggatcgtaagcttgaccctcacattgaagagcaatttggagctggaagattgtt 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccagaaggatcgtaagcttgaccctcacattgaagagcaatttggagctggaagattgtt 317
Query: 612 ggcctgcatctcatctcgacctggtcaatgtggcagagctgatgggtacatattggaggg 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggcctgcatctcatctcgacctggtcaatgtggcagagctgatgggtacatattggaggg 257
Query: 672 taaggaacttgagttctatatgaagaagatccaaaagaagaagggcaagggtgctgccta 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 taaggaacttgagttctatatgaagaagatccaaaagaagaagggcaagggtgctgccta 197
Query: 732 a 732
|
Sbjct: 196 a 196
>gi|262091114|gb|GT228541.1|GT228541 JC106 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone Contig108 5', mRNA sequence
Length = 582
Score = 186 bits (94), Expect = 2e-47
Identities = 109/114 (95%)
Strand = Plus / Plus
Query: 619 atctcatctcgacctggtcaatgtggcagagctgatgggtacatattggagggtaaggaa 678
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 254 atctcatcacgacctggtcaatgtggcagagctgatgggtacatactggagggtaaggaa 313
Query: 679 cttgagttctatatgaagaagatccaaaagaagaagggcaagggtgctgcctaa 732
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 314 ctggagttctacatgaagaagatccaaaagaagaagggcaagggagctgcctaa 367
Score = 61.9 bits (31), Expect = 9e-10
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 378 ggttgatgctgctccatttaagcaatggtatctccagcactatggtgttga 428
|||||||||||| |||||||| || |||||||| ||||||||||| |||||
Sbjct: 26 ggttgatgctgcaccatttaaacagtggtatcttcagcactatggagttga 76
>gi|218687349|gb|GH296003.1|GH296003 JCL452 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 840
Score = 127 bits (64), Expect = 2e-29
Identities = 211/260 (81%)
Strand = Plus / Plus
Query: 187 aacaagacagtaagaaggattcgtgttagaggaggcaatgttaagtggagagccctgaga 246
||||||||||| || || ||| | |||||||| || ||||| |||||| | || ||||
Sbjct: 187 aacaagacagtcaggagaattagggttagaggtggaaatgtgaagtggcgtgctttgagg 246
Query: 247 ttggacacaggaaattattcctggggtagtgaggctgttacccgcaagactcgtatcctt 306
| || || ||||| || |||||||| |||||||||||||| | ||||| | || |||
Sbjct: 247 cttgatactggaaactactcctggggaagtgaggctgttactagaaagaccagaattctt 306
Query: 307 gatgtggtttataatgcctccaacaacgaacttgttaggacccaaactttggtgaagagt 366
|||||||| || ||||| || ||||| || || ||| | || ||||| ||||||||||||
Sbjct: 307 gatgtggtgtacaatgcatctaacaatgagctggttcgtactcaaaccttggtgaagagt 366
Query: 367 gctattgttcaggttgatgctgctccatttaagcaatggtatctccagcactatggtgtt 426
|| ||||| |||||||||||||| |||||||| || |||||||| ||||||||||| |||
Sbjct: 367 gccattgtccaggttgatgctgcaccatttaaacagtggtatcttcagcactatggagtt 426
Query: 427 gacataggcaggaagaagaa 446
|| || ||| | ||||||||
Sbjct: 427 gatattggccgcaagaagaa 446
Score = 105 bits (53), Expect = 7e-23
Identities = 95/109 (87%)
Strand = Plus / Plus
Query: 619 atctcatctcgacctggtcaatgtggcagagctgatgggtacatattggagggtaaggaa 678
|||||||| || |||||||| |||||| | ||||||||||| || |||||||||||||
Sbjct: 607 atctcatcacgccctggtcagtgtggccgtgctgatgggtatattctggagggtaaggag 666
Query: 679 cttgagttctatatgaagaagatccaaaagaagaagggcaagggtgctg 727
|| |||||||| |||||||||||||| | ||||||||||||||| ||||
Sbjct: 667 ctggagttctacatgaagaagatccagaggaagaagggcaagggagctg 715
>gi|218687562|gb|GH295609.1|GH295609 JCL58 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 840
Score = 127 bits (64), Expect = 2e-29
Identities = 211/260 (81%)
Strand = Plus / Plus
Query: 187 aacaagacagtaagaaggattcgtgttagaggaggcaatgttaagtggagagccctgaga 246
||||||||||| || || ||| | |||||||| || ||||| |||||| | || ||||
Sbjct: 187 aacaagacagtcaggagaattagggttagaggtggaaatgtgaagtggcgtgctttgagg 246
Query: 247 ttggacacaggaaattattcctggggtagtgaggctgttacccgcaagactcgtatcctt 306
| || || ||||| || |||||||| |||||||||||||| | ||||| | || |||
Sbjct: 247 cttgatactggaaactactcctggggaagtgaggctgttactagaaagaccagaattctt 306
Query: 307 gatgtggtttataatgcctccaacaacgaacttgttaggacccaaactttggtgaagagt 366
|||||||| || ||||| || ||||| || || ||| | || ||||| ||||||||||||
Sbjct: 307 gatgtggtgtacaatgcatctaacaatgagctggttcgtactcaaaccttggtgaagagt 366
Query: 367 gctattgttcaggttgatgctgctccatttaagcaatggtatctccagcactatggtgtt 426
|| ||||| |||||||||||||| |||||||| || |||||||| ||||||||||| |||
Sbjct: 367 gccattgtccaggttgatgctgcaccatttaaacagtggtatcttcagcactatggagtt 426
Query: 427 gacataggcaggaagaagaa 446
|| || ||| | ||||||||
Sbjct: 427 gatattggccgcaagaagaa 446
Score = 105 bits (53), Expect = 7e-23
Identities = 95/109 (87%)
Strand = Plus / Plus
Query: 619 atctcatctcgacctggtcaatgtggcagagctgatgggtacatattggagggtaaggaa 678
|||||||| || |||||||| |||||| | ||||||||||| || |||||||||||||
Sbjct: 607 atctcatcacgccctggtcagtgtggccgtgctgatgggtatattctggagggtaaggag 666
Query: 679 cttgagttctatatgaagaagatccaaaagaagaagggcaagggtgctg 727
|| |||||||| |||||||||||||| | ||||||||||||||| ||||
Sbjct: 667 ctggagttctacatgaagaagatccagaggaagaagggcaagggagctg 715
>gi|268519495|gb|FM887962.1|FM887962 FM887962 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001259,
mRNA sequence
Length = 651
Score = 127 bits (64), Expect = 2e-29
Identities = 211/260 (81%)
Strand = Plus / Plus
Query: 187 aacaagacagtaagaaggattcgtgttagaggaggcaatgttaagtggagagccctgaga 246
||||||||||| || || ||| | |||||||| || ||||| |||||| | || ||||
Sbjct: 28 aacaagacagtcaggagaattagggttagaggtggaaatgtgaagtggcgtgctttgagg 87
Query: 247 ttggacacaggaaattattcctggggtagtgaggctgttacccgcaagactcgtatcctt 306
| || || ||||| || |||||||| |||||||||||||| | ||||| | || |||
Sbjct: 88 cttgatactggaaactactcctggggaagtgaggctgttactagaaagaccagaattctt 147
Query: 307 gatgtggtttataatgcctccaacaacgaacttgttaggacccaaactttggtgaagagt 366
|||||||| || ||||| || ||||| || || ||| | || ||||| ||||||||||||
Sbjct: 148 gatgtggtgtacaatgcatctaacaatgagctggttcgtactcaaaccttggtgaagagt 207
Query: 367 gctattgttcaggttgatgctgctccatttaagcaatggtatctccagcactatggtgtt 426
|| ||||| |||||||||||||| |||||||| || |||||||| ||||||||||| |||
Sbjct: 208 gccattgtccaggttgatgctgcaccatttaaacagtggtatcttcagcactatggagtt 267
Query: 427 gacataggcaggaagaagaa 446
|| || ||| | ||||||||
Sbjct: 268 gatattggccgcaagaagaa 287
Score = 85.7 bits (43), Expect = 6e-17
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 619 atctcatctcgacctggtcaatgtggcagagctgatgggtacatattggagggtaaggaa 678
|||||||| || |||||||| |||||| | ||||||||||| || |||||||||||||
Sbjct: 448 atctcatcacgccctggtcagtgtggccgtgctgatgggtatattctggagggtaaggag 507
Query: 679 cttgagttctatatgaagaagatccaaaagaagaa 713
|| |||||||| |||||||||||||| | ||||||
Sbjct: 508 ctggagttctacatgaagaagatccagaggaagaa 542
>gi|268521693|gb|FM894289.1|FM894289 FM894289 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004602,
mRNA sequence
Length = 403
Score = 125 bits (63), Expect = 8e-29
Identities = 159/191 (83%)
Strand = Plus / Plus
Query: 256 ggaaattattcctggggtagtgaggctgttacccgcaagactcgtatccttgatgtggtt 315
||||| || |||||||| |||||||||||||| | ||||| | || |||||||||||
Sbjct: 68 ggaaactactcctggggaagtgaggctgttactagaaagaccagaattcttgatgtggtg 127
Query: 316 tataatgcctccaacaacgaacttgttaggacccaaactttggtgaagagtgctattgtt 375
|| ||||| || ||||| || || ||| | || ||||| |||||||||||||| |||||
Sbjct: 128 tacaatgcatctaacaatgagctggttcgtactcaaaccttggtgaagagtgccattgtc 187
Query: 376 caggttgatgctgctccatttaagcaatggtatctccagcactatggtgttgacataggc 435
|||||||||||||| |||||||| || |||||||| ||||||||||| ||||| || |||
Sbjct: 188 caggttgatgctgcaccatttaaacagtggtatcttcagcactatggagttgatattggc 247
Query: 436 aggaagaagaa 446
| ||||||||
Sbjct: 248 cgcaagaagaa 258
>gi|268525970|gb|FM891226.1|FM891226 FM891226 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001350,
mRNA sequence
Length = 638
Score = 109 bits (55), Expect = 4e-24
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 304 cttgatgtggtttataatgcctccaacaacgaacttgttaggacccaaactttggtgaag 363
||||||||||| || ||||| || ||||| || || ||| | || ||||| |||||||||
Sbjct: 619 cttgatgtggtgtacaatgcatctaacaatgagctggttcgtactcaaaccttggtgaag 560
Query: 364 agtgctattgttcaggttgatgctgctccatttaagcaatggtatctccagcactatggt 423
||||| ||||| |||||||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 559 agtgccattgtccaggttgatgctgcaccatttaaacagtggtatcttcagcactatgga 500
Query: 424 gttgacataggcaggaagaagaa 446
||||| || ||| | ||||||||
Sbjct: 499 gttgatattggccgcaagaagaa 477
Score = 105 bits (53), Expect = 7e-23
Identities = 95/109 (87%)
Strand = Plus / Minus
Query: 619 atctcatctcgacctggtcaatgtggcagagctgatgggtacatattggagggtaaggaa 678
|||||||| || |||||||| |||||| | ||||||||||| || |||||||||||||
Sbjct: 316 atctcatcacgccctggtcagtgtggccgtgctgatgggtatattctggagggtaaggag 257
Query: 679 cttgagttctatatgaagaagatccaaaagaagaagggcaagggtgctg 727
|| |||||||| |||||||||||||| | ||||||||||||||| ||||
Sbjct: 256 ctggagttctacatgaagaagatccagaggaagaagggcaagggagctg 208
>gi|268525249|gb|FM895891.1|FM895891 FM895891 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002891,
mRNA sequence
Length = 408
Score = 105 bits (53), Expect = 7e-23
Identities = 95/109 (87%)
Strand = Plus / Plus
Query: 619 atctcatctcgacctggtcaatgtggcagagctgatgggtacatattggagggtaaggaa 678
|||||||| || |||||||| |||||| | ||||||||||| || |||||||||||||
Sbjct: 76 atctcatcacgccctggtcagtgtggccgtgctgatgggtatattctggagggtaaggag 135
Query: 679 cttgagttctatatgaagaagatccaaaagaagaagggcaagggtgctg 727
|| |||||||| |||||||||||||| | ||||||||||||||| ||||
Sbjct: 136 ctggagttctacatgaagaagatccagaggaagaagggcaagggagctg 184
>gi|268526374|gb|FM891630.1|FM891630 FM891630 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001966,
mRNA sequence
Length = 436
Score = 89.7 bits (45), Expect = 4e-18
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 631 cctggtcaatgtggcagagctgatgggtacatattggagggtaaggaacttgagttctat 690
|||||||| | |||| | ||||||||||| || ||||||||||||| || ||||||||
Sbjct: 269 cctggtcagtctggccgtgctgatgggtatattctggagggtaaggagctggagttctac 210
Query: 691 atgaagaagatccaaaagaagaagggcaagggtgctg 727
|||||||||||||| | ||||||||||||||| ||||
Sbjct: 209 atgaagaagatccagaggaagaagggcaagggagctg 173
>gi|268523685|gb|FM892218.1|FM892218 FM892218 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_002710,
mRNA sequence
Length = 284
Score = 77.8 bits (39), Expect = 2e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 665 tggagggtaaggaacttgagttctatatgaagaagatccaaaagaagaagggcaagggtg 724
||||||||||||| || |||||||| |||||||||||||| | ||||||||||||||| |
Sbjct: 14 tggagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggag 73
Query: 725 ctg 727
|||
Sbjct: 74 ctg 76