Jatropha Genome Database
- JcCA0306971.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0306971.10 - phase: 0
(309 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268523816|gb|FM890502.1|FM890502 FM890502 Jatropha curcas emb... 190 6e-49
gi|262090713|gb|GT229071.1|GT229071 JC636 Jatropha seeds from fr... 176 9e-45
gi|268525000|gb|FM895642.1|FM895642 FM895642 Jatropha curcas emb... 72 4e-13
>gi|268523816|gb|FM890502.1|FM890502 FM890502 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000172,
mRNA sequence
Length = 467
Score = 190 bits (96), Expect = 6e-49
Identities = 200/237 (84%)
Strand = Plus / Plus
Query: 51 cgatcaatccgctcacatcaacctcaaagtcaagggtcaggatggaaatgaagnnnnnnn 110
||||||||| ||||||||||| ||||||||||| || |||||||| |||||||
Sbjct: 69 cgatcaatcggctcacatcaatctcaaagtcaaaggccaggatggcaatgaagtcttctt 128
Query: 111 caggatcaaaagaagcacacaactgaagaagctgatgaatgcctactgtgatagacaatc 170
|||||| || |||||||| |||||||||||||| |||||||| ||||||||| |||| ||
Sbjct: 129 caggattaagagaagcactcaactgaagaagctcatgaatgcttactgtgatcgacagtc 188
Query: 171 tgttgagtttaactcaattgcctttttgtttgatggtcgccgtcttcgaggagagcagac 230
|| ||||| ||||| ||||| ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 189 agtggagttcaactctattgcatttttatttgatggtcgccggcttcgtggagagcagac 248
Query: 231 tcctgatgagctggaaatggaagacggcgatgagattgatgccatgttgcaccaaac 287
|| |||||| |||||||||| || || |||||||| || || ||| ||||||||||
Sbjct: 249 accagatgagttggaaatggaggatggggatgagatagacgcaatgctgcaccaaac 305
>gi|262090713|gb|GT229071.1|GT229071 JC636 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL14SE.D09.scf 5', mRNA sequence
Length = 620
Score = 176 bits (89), Expect = 9e-45
Identities = 200/238 (84%), Gaps = 1/238 (0%)
Strand = Plus / Minus
Query: 51 cgatcaatccgctcacatcaacctcaaagtcaagggtcaggatggaaatgaagnnnnnnn 110
||||||||| ||||||||||| ||||||||||| || |||||||| |||||||
Sbjct: 464 cgatcaatcggctcacatcaatctcaaagtcaaaggccaggatggcaatgaaggtcttct 405
Query: 111 -caggatcaaaagaagcacacaactgaagaagctgatgaatgcctactgtgatagacaat 169
|||||| || |||||||| |||||||||||||| |||||||| ||||||||| |||| |
Sbjct: 404 tcaggattaagagaagcactcaactgaagaagctcatgaatgcttactgtgatcgacagt 345
Query: 170 ctgttgagtttaactcaattgcctttttgtttgatggtcgccgtcttcgaggagagcaga 229
| || ||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||||||||
Sbjct: 344 cagtggagttcaactctattgcatttttatttgatggtcgccggcttcgtggagagcaga 285
Query: 230 ctcctgatgagctggaaatggaagacggcgatgagattgatgccatgttgcaccaaac 287
| || |||||| |||||||||| || || |||||||| || || ||| ||||||||||
Sbjct: 284 caccagatgagttggaaatggaggatggggatgagatagacgcaatgctgcaccaaac 227
>gi|268525000|gb|FM895642.1|FM895642 FM895642 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002596,
mRNA sequence
Length = 232
Score = 71.9 bits (36), Expect = 4e-13
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 181 aactcaattgcctttttgtttgatggtcgccgtcttcgaggagagcagactcctgatgag 240
||||| ||||| ||||| |||||||| || | || || |||||||||||||||||||||
Sbjct: 21 aactccattgcatttttatttgatgggcggagactgcgtggagagcagactcctgatgag 80
Query: 241 ctggaaatggaagacggcgatgagattgatgc 272
|| || |||||||| || ||||| ||||||||
Sbjct: 81 cttgagatggaagatggtgatgaaattgatgc 112