Jatropha Genome Database

JcCA0306681.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0306681.10 - phase: 1 /pseudo/partial
         (563 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524800|gb|FM895498.1|FM895498 FM895498 Jatropha curcas emb...   565   e-161
gi|268522687|gb|FM896130.1|FM896130 FM896130 Jatropha curcas emb...   377   e-105

>gi|268524800|gb|FM895498.1|FM895498 FM895498 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002429,
           mRNA sequence
          Length = 635

 Score =  565 bits (285), Expect = e-161
 Identities = 308/313 (98%), Gaps = 2/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 198 atggtgaaggtgtggatagaggtagaatctcagcgatataaccctgcaatagctccaata 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atggtgaaggtgtggatagaggtagaatctcagcgatataaccctgcaatagctccaata 383

                                                                       
Query: 258 gtgtaccaactttatgtggggccactgaaaggcgttgcacctgacgaagcaatcatagac 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgtaccaactttatgtggggccactgaaaggcgttgcacctgacgaagcaatcatagac 443

                                                                       
Query: 318 acaaacatagagaagctaagaaaggtgcttgacatatacgaagaaaggctgagttgcagc 377
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaaacatagagaagctaagacaggtgcttgacatatacgaagaaaggctgagttgcagc 503

                                                                       
Query: 378 aaataccttgcaggagatttcttcagcttagcagatcttcatcatcttccttacacttac 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaataccttgcaggagatttcttcagcttagcagatcttcatcatcttccttacacttac 563

                                                                       
Query: 438 tatcttatgaagacatctgctgcttctgtcataaatgaacgtccacg-tgtcaaggcatg 496
           |||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||
Sbjct: 564 tatcttatgaagacatctgctgcttctgtcataaatgaccgtccccgttgtc-aggcatg 622

                        
Query: 497 gtgggatgatatc 509
           |||||||||||||
Sbjct: 623 gtgggatgatatc 635



 Score =  377 bits (190), Expect = e-105
 Identities = 197/198 (99%), Gaps = 1/198 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgcttaagctatatggagcggccatgtccacaagcacctccctcgtgctaacctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39  atggcgcttaagctatatggagcggccatgtccacaagcacctccctcgtgctaacctgt 98

                                                                       
Query: 61  ctgcacgagaaagaagtagatttttgagttcatccctgtcgatcttttcgccggcgaaca 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 99  ctgcacgagaaagaagtagatttt-gagttcatccctgtcgatcttttcgccggcgaaca 157

                                                                       
Query: 121 taaacagcctcatttcggagccaaaaatccctttggtcaggttccagtgcttgaggatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 taaacagcctcatttcggagccaaaaatccctttggtcaggttccagtgcttgaggatgg 217

                             
Query: 181 tgatctcactttatttga 198
           ||||||||||||||||||
Sbjct: 218 tgatctcactttatttga 235


>gi|268522687|gb|FM896130.1|FM896130 FM896130 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003287,
           mRNA sequence
          Length = 503

 Score =  377 bits (190), Expect = e-105
 Identities = 197/198 (99%), Gaps = 1/198 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgcttaagctatatggagcggccatgtccacaagcacctccctcgtgctaacctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  atggcgcttaagctatatggagcggccatgtccacaagcacctccctcgtgctaacctgt 128

                                                                       
Query: 61  ctgcacgagaaagaagtagatttttgagttcatccctgtcgatcttttcgccggcgaaca 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 129 ctgcacgagaaagaagtagatttt-gagttcatccctgtcgatcttttcgccggcgaaca 187

                                                                       
Query: 121 taaacagcctcatttcggagccaaaaatccctttggtcaggttccagtgcttgaggatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 taaacagcctcatttcggagccaaaaatccctttggtcaggttccagtgcttgaggatgg 247

                             
Query: 181 tgatctcactttatttga 198
           ||||||||||||||||||
Sbjct: 248 tgatctcactttatttga 265



 Score =  297 bits (150), Expect = 7e-81
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                       
Query: 198 atggtgaaggtgtggatagaggtagaatctcagcgatataaccctgcaatagctccaata 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atggtgaaggtgtggatagaggtagaatctcagcgatataaccctgcaatagctccaata 413

                                                                       
Query: 258 gtgtaccaactttatgtggggccactgaaaggcgttgcacctgacgaagcaatcatagac 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtgtaccaactttatgtggggccactgaaaggcgttgcacctgacgaagcaatcatagac 473

                                         
Query: 318 acaaacatagagaagctaagaaaggtgctt 347
           ||||||||||||||||||||||||||||||
Sbjct: 474 acaaacatagagaagctaagaaaggtgctt 503