Jatropha Genome Database

JcCA0304841.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0304841.20 + phase: 0 
         (1014 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680849|gb|GO247000.1|GO247000 JcrME_RL0544 Expressed seque...   749   0.0  

>gi|237680849|gb|GO247000.1|GO247000 JcrME_RL0544 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 554

 Score =  749 bits (378), Expect = 0.0
 Identities = 378/378 (100%)
 Strand = Plus / Plus

                                                                       
Query: 321 aaagacaatcgagaaaattatctacacgtcgtcgtttttcgcccttggaccaaccgatgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   aaagacaatcgagaaaattatctacacgtcgtcgtttttcgcccttggaccaaccgatgg 61

                                                                       
Query: 381 atatattgccgatgagaaccaagtgcactcagagagggttttttgtacggagtacgagaa 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  atatattgccgatgagaaccaagtgcactcagagagggttttttgtacggagtacgagaa 121

                                                                       
Query: 441 atccaaggcgatcgctgataaaattgcattacaagctgctgccaatggtgtaccgatagt 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atccaaggcgatcgctgataaaattgcattacaagctgctgccaatggtgtaccgatagt 181

                                                                       
Query: 501 ggtggtttatcccggtgtcatttatggtcctggcaagcttactacgggtaatattgtggc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ggtggtttatcccggtgtcatttatggtcctggcaagcttactacgggtaatattgtggc 241

                                                                       
Query: 561 tcaattgctgattgaacgatttcaagggcgtttaccaggatacataggcaatggaaatga 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tcaattgctgattgaacgatttcaagggcgtttaccaggatacataggcaatggaaatga 301

                                                                       
Query: 621 taaattttccttcagtcatgttgatgatgtagtccaaggacacatagcagcaatgaacaa 680
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taaattttccttcagtcatgttgatgatgtagtccaaggacacatagcagcaatgaacaa 361

                             
Query: 681 aggtcaaccaggtgaaag 698
           ||||||||||||||||||
Sbjct: 362 aggtcaaccaggtgaaag 379



 Score =  317 bits (160), Expect = 1e-86
 Identities = 176/181 (97%), Gaps = 4/181 (2%)
 Strand = Plus / Plus

                                                                        
Query: 825  agttcttttctgtcgacttacgggaaagcttccacttatcagtccaccgacagtgcatgt 884
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 378  agttcttttctgtcgacttacgggaaagcttccacttatcagtccaccg----tgcatgt 433

                                                                        
Query: 885  tctaagacaccaatgggcatattcttgtgagaaggccaaagcaaaagtggactataatcc 944
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434  tctaagacaccaatgggcatattcttgtgagaaggccaaagcaaaagtggactataatcc 493

                                                                        
Query: 945  tagaagcttgcaggaaggactaacggagttacttccctggttgaaaagctcaagggtgat 1004
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 494  tagaagcttgcaggaaggactaacggagttacttccctggttgaaaagctcgagggtgat 553

             
Query: 1005 a 1005
            |
Sbjct: 554  a 554